barSeed - Barley Seed Development Database

Probe CUST_8647_PI390587928

Source Contig U35_24471

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8647_PI390587928	Hv_44K_v2	AATGCAACTCTCCCAAATTCCAAGCAATGAAATGCAATGCAGTCTACCAAACTCAAAAAA	698	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.166	0.226	0.902	1.893	1.230	1.241
Raw	98.529	223.250	765.674	2482.570	559.717	628.487

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66195.1	5505	3e-21	1916 - 1969	100	54 / 54	plus	ABC15196 ABC20409 ABC22174 ABC38352
MLOC	MLOC_66194.1	2442	3e-21	1834 - 1887	100	54 / 54	plus	ABC15196 ABC20409 ABC22174 ABC38352
JLOC1	JLOC1_43598.1	4500	2e-21	3558 - 3611	100	54 / 54	minus
Harvest35	U35_24471	769	3e-25	699 - 758	100	60 / 60	plus

Contig Sequence (769 bp)

>U35_24471 769 Hv_44K_v2
AAAACAGCGCAGGGCTCATGGAGATGGAAGGAAACCAAATCCAGATCTCACCCATGGGGT
CCGCGCCGTCGAGGTCGTCCCCCCGGCAGTGGAGCTGGGGCTCGGCACTCGCCGGCGCCG
TCACCACGGCGGCGGCGGCGGGCGTGCTGGTCTGTAGGCCGAGGGACCCGAGCTTCGAGC
TCATCTCCATGAACCTGTCCACCTTCCACTTCCGGCCGCCGGCGGCGCTGGACATCGGCC
TCACCCTCACCGTCCACGCCACCAACCCCAACGTGGTGCCCGTGCGCTACGGCGCCTCCA
ACGTCTCCATCCTCTACGGGGGCACGCTCCTCGGCACCGCGCGCCTCGACGCCGGCCAGC
AGCCCGCCACGTCGTGCCGCCTGCTCCACCTCCCGGCCCGGCTCAACGCCATGGAGCTCG
CCCACCACGCCGGCGCTATCCTCGCGGACGCCACGCGCCGGCACATGGAGCTGGACGCCG
TCGTGGAGATCGCGGGCGAAGCGGCCGTGCTGCTCTGGTCGCGCCGCTTCTCCGTCCGCA
TCGACAGCCACATCGTCGTCGACCCCGTCTTCCTCGAGGTCGTGGAGCAGGACAACCGCT
CCGAGATGCAGCTCTACCTGACCTGAGTTAGCTGCTATGTGTATCACCACCTGAACCCTC
ACTCAAAACCTTATTCGCCTGTTTGTGCGATGAGATGCAATGCAACTCTCCCAAATTCCA
AGCAATGAAATGCAATGCAGTCTACCAAACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44410.1	193	3e-95	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi3g42830.1	193	4e-90
Arabidopsis v10	AT3G44380.1	186	1e-51	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family \| chr3:16036254-16036814 REVERSE LENGTH=186