barSeed - Barley Seed Development Database

Probe CUST_13250_PI390587928

Source Contig U35_18562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13250_PI390587928	Hv_44K_v2	ATCAATTTGTTGTGGAGCCGCCGAATATTCTTGTCAAAAATTCTATGACGGGACAAAAAA	1245	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.288	1.724	1.301	0.937	0.280	0.327
Raw	6748.540	14311.133	9150.113	10838.117	1083.290	1399.090

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66195.1	5505	9e-22	1978 - 2032	100	55 / 55	minus	ABC15196 ABC20409 ABC22174 ABC38352
MLOC	MLOC_66194.1	2442	9e-22	1896 - 1950	100	55 / 55	minus	ABC15196 ABC20409 ABC22174 ABC38352
JLOC1	JLOC1_43598.1	4500	5e-22	3495 - 3549	100	55 / 55	plus
Harvest35	U35_18562	1316	3e-25	1246 - 1305	100	60 / 60	plus

Contig Sequence (1316 bp)

>U35_18562 1316 Hv_44K_v2
GTTAGAAGTCATGGAGGAAACATCCAAGTTGCAGAACCACTCAAACCACACCCATGAAGC
ACAGGTCAAAAGCCTTGAAGAGTTTCAAAAGGCTTATGAGGAACAATCCAAGTCTGAGGA
ACAGAGGCTTCTGGCAGATATCACCAGTTTGGTGTCCAAACACATTGTTCGACAAAGAGA
GCTGGTGGATGTTAGATTAAACTCTCTTGGCGATGCTGCTCGTGGTAACAAGACATTTCT
GGACGAGCACACATCTGCTATGGAGGGTGTCACAAAGGATGCCAAGAGAAAGTGGGAAAT
GTTTGCAGAGCAAGCAGAGAATGACTGCAAAGTTGGCTCCAGCTTCTCTTCAGCTAAGCA
TTGCCGCATGGAAACAATTATGCAGGAGTGTGCATGCACTGTCGACTCTGCTGCTCAACA
ATGGAAAAAATCCCATGCTGCAGTTAATGATTTGTGCACAAAACAAGTGGCTGAAGTTGA
AGTATTTGTCAGGGCTGCAATCGAAAACAACGAGCAGCATGAAGCAGGGATTGCATCATC
TCGTGCCTTGGCTGAAGAACAAGCATCCAACAGTAGCAAAGAAATACTGCAGGACATCGA
CGATCTACTGGAAGAGGCACGTAATTCATCATCAAGAGTTGTGACGACAGTGGAAGCACA
TTCGGTAGAGATACAGCATTTGCAGGACAACCACTCTGGACAGACTTCAGGCGTCAACAC
ACATGCCGAGAAGGCTTTCCAAAGCAGCTACAGGGACTATGAGCCGACTGGTGAAACTCC
GGTGAGGTGTGAGCCGGAAGTCCCGAGCAAAGGCACGATCGAGTCGTTGCGAGCGATGCC
AATCGAGTCCCTGATGGATGAGTTCCGTGAGAACCATCCCTATGAATCGAGCAAGGAACC
CAAGCCGTCGCTCATCCCTCGCTCGCCACTTGCGACACTCAACTGAGAAACAATGATAAT
ACTTCTTTTCTGTGTGCAGTGTAATCTGATTAGGACATCAAATCGCTGCTGGCTTTGATG
TCCTTGTTGTGCCAGGTTTTATGGGATGCTAGCCCTCATCCAGTGTCTTTTGCATTCTTG
CTAGAATGTATCAATTTGTTGTGGAGCCGCCGAATATTCTTGTAAAAAATTCTATGACGA
GTGTCTTTTGCATTCCTGCTAGAATGTATCAATTTGTTGTGGAGCCGCCGAATATTCTTG
TAAAAAATTCTATGACGAGTGTCTTTTGCATTCCTGCTAGAATGTATCAATTTGTTGTGG
AGCCGCCGAATATTCTTGTCAAAAATTCTATGACGGGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_18562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44420.1	410	0.0	protein\|kinesin-related protein, putative, expressed
Brachypodium v1_2	Bradi3g42837.1	1007	0.0
Arabidopsis v10	AT2G36200.2	1040	6e-91	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:15180078-15185189 REVERSE LENGTH=1040