- Probe CUST_31433_PI390587928
- Source Contig U35_50202
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31433_PI390587928 | Hv_44K_v2 | TCTATGCTGCACGTGAAAAGGTTGGGGTATACATTCCAAAAGATAGATACCAGATGGAGG | 582 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.441 | 1.420 | 1.238 | 0.715 | 0.547 | 0.435 |
| Raw | 987.418 | 1270.352 | 1131.743 | 905.732 | 271.526 | 237.668 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66195.3 | 3421 | 2e-24 | 1319 - 1378 | 100 | 60 / 60 | plus | ABC20409 ABC38352 |
| MLOC | MLOC_66195.2 | 2344 | 2e-24 | 2207 - 2266 | 100 | 60 / 60 | minus | ABC20409 ABC38352 |
| MLOC | MLOC_66195.1 | 5505 | 2e-24 | 4131 - 4190 | 100 | 60 / 60 | minus | ABC15196 ABC20409 ABC22174 ABC38352 |
| MLOC | MLOC_66195.5 | 1652 | 2e-24 | 250 - 309 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_66195.4 | 3276 | 2e-24 | 1875 - 1934 | 100 | 60 / 60 | minus | ABC20409 |
| JLOC1 | JLOC1_43598.1 | 4500 | 8e-25 | 1337 - 1396 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52250 | 645 | 3e-25 | 583 - 642 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50202 | 645 | 3e-25 | 583 - 642 | 100 | 60 / 60 | plus |
Contig Sequence (645 bp)
>U35_50202 645 Hv_44K_v2 TTGTGAGAGGTTTGGAGGAAGAAATAGTCACTAATTGTAGCGAAATATTCTCTCTTTTGG AAAGAGGATCTGCAAAGCGCCGCACAGCAGAGACTCTTTTGAACAAGCAATCAAGCCGTT CGCACTCGCTTTTCTCAATCACAATTCACATAAAAGAGGCAACCCCTGAAGGAGAAGAAC TGATAAAATGTGGGAAATTAAACCTGGTTGATCTGGCTGGGTCTGAGAACATCTGTCGTT CTGGAGCTAGGGAGGGCCGAGCAAGAGAGGCTGGTGAAATAAACAAAAGTTTGCTTACTT TAGGCCGTGTCATTACGGCATTGGTTGAGCACCTTGGACATGTTCCTTACAGAGACAGTA AGCTCACAAGGTTGCTTCGTGATTCACTTGGAGGGAGAACAAAAACTTGCATTATTGCTA CTGTTTCGCCTTCTGTACATTGTCTTGAGGAGACATTAAGCACACTGGATTATGCACACC GGGCAAAGAGCATAAAAAACAGGCCCGAGGTTAACCAAAAAATGATGAAATCAACGTTAA TCAAGGATCTCTATGGAGAAATCGACCGACTGAAAGCAGAGGTCTATGCTGCACGTGAAA AGGTTGGGGTATACATTCCAAAAGATAGATACCAGATGGAGGAGA
Homology of Contig U35_50202 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g02670.1 | 1057 | 4e-105 | protein|kinesin motor domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g42837.1 | 1007 | 8e-125 | |
| Arabidopsis v10 | AT2G36200.2 | 1040 | 3e-116 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1040 |