barSeed - Barley Seed Development Database

Probe ABC16294

Source Contig ABC16294

barSeed

Links

Affymetrix Source Sequence (1180 bp)

>ABC16294 1180
GGCTTGAAGCCTCTTGTTCCCGCTTGTTTGAGCTCCTTGGAGTTGATGTTGTGATGGCCA
ATGACTGCATTGGTGCAGAAGTTGAGAAATTGGCTGCTGCTTTGCCAGAGGGTGGTGTTC
TACTCCTAGAGAATGTTAGATTCTACAAAGGGGAAGTAAATAATGATCTTAAGTTTGCTA
AGAAGCTTGCATCAGTTGCTGACCTTTACGTGAATGATGCTTTCGGCACACCACATTGGC
ATCATGCTTCAACAAAGGGTGTAACCAAGTTTTTGAGTCCTATAGTTGCTGGCTTCTTCC
TGATGCAGAAGCCTTCTGAAGAAGTTGACAAGAAAATACTCATCGAAGGAGCACTGTCAC
GAATTACTGACTGTAAAAGGAACACCAGCAGCATTCAACAAGCCATCTTAAAATTAAGCA
CTCTTACAGTGGATTCCGAAGACTGCTGTGAGGCACTTGTCGTTGCCAGTGGCGTACACA
TACTGGAGAATCTAATGCATCGATCCAACGAGAAAGTCCGGAATCAAGTACTCTATACAC
TGTGGAACGTTGCACAATTCCCACATCTTCTATTAGTTCTTGCTTACGACTCACTGGTTA
ATACTTTGTTCACGGATCTGATAAGCGAGAAGAGTGAAGCGTCTTTCACCGCATGTGGTA
TTTTGAAGAAGTTGTGTGAGTCCGCAGGTAAGCATGAAATCCCTGAAATCCCTGGGCTTT
GTCAGGACATAACACGTCTGCGCACTGTGGTGGAATTGCGCGAGCGGCATGAAACAGGAG
AGGACGAGGTATCGACGCACGGAATTCCTTGAGGACAAATTGCGGCAGCTTAGGGAGATT
CGCGCCCTCTGCCAACTTATCGAAGAATTGATTGTCGCCCGGGGGTAAATTTTGTAGACA
GGCATGATGGAACCCCTTTGTGTCGGCAAGCAAATTCATTGTAGACTGGATCTTGCTTTG
TGGTTGTTTTGCATGAGTCGTGGTAGTAAGGCGGTAAACCATCTCTTTGCAGCAATGGCA
GCCCAAGCCTAAGCTTCTGCCGTTGGTCGACGTGCTAGTGCTCAAGGAGGAGACTACTCG
ACCACCCACTCGCAGATGCAGTACCCGCCAGTTCCACCGAGCTTTGGGCGGGCTATGATG
TGGAGCCATTAACCTGTACTCTAAAACTTCCCTCCTTTAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356117	1603	0.0	389 - 1570	99	1178 / 1182	CUST_39438_PI390587928	ABC00917 ABC00994 ABC16294
MLOC_23370.2	766	0.0	1 - 490	99	488 / 490	CUST_39438_PI390587928	ABC16294
MLOC_23370.1	332	2e-170	1 - 325	100	325 / 325	CUST_39438_PI390587928	ABC16294
MLOC_23902.1	736	2e-165	4 - 319	100	316 / 316	None	ABC16294
MLOC_17111.1	898	1e-158	2 - 312	99	309 / 311	None	ABC00917 ABC00994 ABC16294
MLOC_17111.2	877	1e-158	2 - 312	99	309 / 311	None	ABC00917 ABC00994 ABC16294
MLOC_67009.1	1697	2e-96	812 - 1119	87	272 / 311	CUST_3615_PI390587928 CUST_20717_PI390587928 CUST_26371_PI390587928	ABC00230 ABC00917 ABC00994 ABC16294 ABC37244
AK354003	1648	1e-69	370 - 677	82	257 / 312	CUST_42013_PI390587928 CUST_40442_PI390587928 CUST_31959_PI390587928	ABC00917 ABC00994 ABC16294
MLOC_16517.1	1062	1e-69	435 - 742	82	257 / 312	CUST_31959_PI390587928	ABC00917 ABC00994 ABC16294