barSeed - Barley Seed Development Database

Probe CUST_42013_PI390587928

Source Contig U35_35795

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42013_PI390587928	Hv_44K_v2	GGTTTCTCTGAAGGTTTTGTCAGACGATCAGTAGTGAATGAGCTTGACTTCCGACGCAAT	627	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.233	0.280	0.455	1.966	1.869	2.410
Raw	53.389	106.310	152.343	1007.195	333.626	474.398

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354003	1648	7e-23	1448 - 1507	98	59 / 60	plus	ABC00917 ABC00994 ABC16294
MLOC	MLOC_15983.1	824	7e-23	632 - 691	98	59 / 60	plus	None
JLOC1	JLOC1_10990.1	1002	4e-23	607 - 666	98	59 / 60	plus
Harvest21	ABC50400	634	1e-23	70 - 129	98	59 / 60	minus
Harvest35	U35_35795	736	3e-25	628 - 687	100	60 / 60	plus
Harvest35	U35_23239	724	1e-23	508 - 567	98	59 / 60	plus

Contig Sequence (736 bp)

>U35_35795 736 Hv_44K_v2
GGCGAATTGGGCCCTCTCCATAATGCTCGAGCGGCCGCTAAAATCTCTTGTGGAGGATGA
CAAGCTTGAACTGGCAAACTCTCTTATTGAGAAGGCCAAGTCGAAGGGAGTCTCTCTTTT
GCTTCCCACTGATATTGTAGTAGCAAATAATTTTGCTGCAGATGCTGAGAGCAAGATTGT
TCCTGCCTCTGCCATTCCTGATGGTTGGATGGGCCTTGACATTGGCCCGGATTCTATCAG
GAAATTCAGTGAAACTTTGGACACTACCAAGACTGTCATCTGGAACGGGCCAATGGGAGT
TTTCGAATTTGAAAAGTTTGCTGCTGGCACCGATGCGATCGCGAAAAAGTTGGCTGATAT
CACATCACAAGGCGTGACAACCATCATCGGAGGCGGCGACTCTGTTGCTGCCGTCGAGAA
GGCTGGGTTGGCGAGTAAGATGAGCCACATTTCGACCGGTGGTGGCGCAAGCCTGGAGCT
GCTGGAAGACAAGACTCTCCCAGGCGTCCTTGCTCTGGACGACGCATAGGCTAGGCTGGT
GGCAAGACGTGGTTACCTAGCTTTACTCCACTCTATTGTTCGGACCCTTGGTGTACAGAT
GCGAGTGTATCCTGAAATAGAAGTAGAGGTTTCTCTGAAGGTTTTGTCAGACGATCAGTA
GTGAATGAGCTTGACTTCCGACGCAATGGGAGCAAACATCTCTCAAGGTTTTGTCAGACT
ATTTGGCACAAGCAAA

Homology of Contig U35_35795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45710.1	402	9e-92	protein\|phosphoglycerate kinase protein, putative, expressed
Brachypodium v1_2	Bradi3g05220.1	402	6e-85
Arabidopsis v10	AT1G79550.1	401	9e-83	\| Symbols: PGK \| phosphoglycerate kinase \| chr1:29924347-29926295 REVERSE LENGTH=401