barSeed - Barley Seed Development Database

Probe CUST_26371_PI390587928

Source Contig U35_38455

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26371_PI390587928	Hv_44K_v2	CCAAGGTTGATATCCTCATCCTAGGTGGTGGTATGATCTTTACATTCTACAAGGCCCATC	470	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.241	0.336	1.268	1.985	1.060	1.009
Raw	1948.853	4031.900	14024.300	34600.093	6513.583	6730.100

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67009.1	1697	2e-23	645 - 702	100	58 / 58	minus	ABC00230 ABC00917 ABC00994 ABC16294 ABC37244
JLOC1	JLOC1_44204.1	1874	1e-23	908 - 965	100	58 / 58	plus
Harvest21	ABC34435	718	3e-25	471 - 530	100	60 / 60	plus
Harvest21	ABC00994	1364	4e-24	783 - 840	100	58 / 58	minus	ABC00994
Harvest21	ABC00917	1645	4e-24	756 - 813	100	58 / 58	plus	ABC00917
Harvest35	U35_38455	718	3e-25	471 - 530	100	60 / 60	plus
Harvest35	U35_42402	588	4e-24	525 - 582	100	58 / 58	plus
Harvest35	U35_384	1632	4e-24	767 - 824	100	58 / 58	plus

Contig Sequence (718 bp)

>U35_38455 718 Hv_44K_v2
GGTCATCCTGGCCAGCCATCTGGGCCGCCCAAAAGGTGTCACCCCCAAGTTCAGCTTGAA
GCCTCTTGTTCCTCGCTTGTCTGAGCTCCTTGGTCTTGAAGTTGTGATGGCCCCTGACTG
CATTGGTCAAGAAGTTGAGAAATTGGCTGCTGCTTTGCCAGATGGTGGTGTTCTACTTCT
AGAGAATGTTAGATTCTACAAGGAGGAAGAGAAGAACGAACCTGAGTTTGCTAAGAAGCT
TGCATCAGTTGCTGACCTTTATGTAAATGATGCCTTCGGCACTGCACATAGGGCGCATGC
TTCAACCGAGGGTGTAACCAAGTTTTTGAGGCCTTCTGTTGCTGGCTTCCTCATGCAGAA
GGAACTTGACTATCTTGTTGGAGCCGTTGCCAACCCAAAGAAGCCATTTGCTGCCATTGT
TGGTGGATCCAAGGTCTCATCTAAGATTGGTGTGATCGAGTCTCTGCTGGCCAAGGTTGA
TATCCTCATCCTAGGTGGTGGTATGATCTTTACATTCTACAAGGCCCATCCCACAACAAC
CACAACCATACCCACAACAACCACAACCATTTCCACAACAACCCATCCCACAACAACCAC
AACCATACCCACAACAACCACAACCATTTCCACAACAACCCTTCCCATCACAACAACCAT
TTCCGCAACAACCACCATTTTGGCAACAACAACCAATTCTATCGCAGCAACAACCATG

Homology of Contig U35_38455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07260.3	372	1e-109	protein\|phosphoglycerate kinase protein, putative, expressed
Brachypodium v1_2	Bradi3g05220.1	402	1e-112
Arabidopsis v10	AT1G56190.1	478	1e-102	Phosphoglycerate kinase family protein \| chr1:21028403-21030454 FORWARD LENGTH=478