barSeed - Barley Seed Development Database

Probe CUST_39438_PI390587928

Source Contig U35_7406

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39438_PI390587928	Hv_44K_v2	TTGTGGTTGTTTTGCATGAGTCGTGGTAGTAAGGCGGTAAACCATCTCTTTGCAGCAATG	957	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.674	1.816	1.113	0.945	0.320	0.374
Raw	43.517	74.043	39.020	59.605	6.032	8.124

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356117	1603	2e-24	1348 - 1407	100	60 / 60	plus	ABC00917 ABC00994 ABC16294
MLOC	MLOC_23370.1	332	2e-24	95 - 154	100	60 / 60	minus	ABC16294
MLOC	MLOC_23370.2	766	2e-24	95 - 154	100	60 / 60	minus	ABC16294
JLOC1	JLOC1_16151.1	701	8e-25	485 - 544	100	60 / 60	plus
Harvest21	ABC16294	1180	3e-25	164 - 223	100	60 / 60	minus	ABC16294
Harvest35	U35_7406	1180	3e-25	958 - 1017	100	60 / 60	plus

Contig Sequence (1180 bp)

>U35_7406 1180 Hv_44K_v2
GGCTTGAAGCCTCTTGTTCCCGCTTGTTTGAGCTCCTTGGAGTTGATGTTGTGATGGCCA
ATGACTGCATTGGTGCAGAAGTTGAGAAATTGGCTGCTGCTTTGCCAGAGGGTGGTGTTC
TACTCCTAGAGAATGTTAGATTCTACAAAGGGGAAGTAAATAATGATCTTAAGTTTGCTA
AGAAGCTTGCATCAGTTGCTGACCTTTACGTGAATGATGCTTTCGGCACACCACATTGGC
ATCATGCTTCAACAAAGGGTGTAACCAAGTTTTTGAGTCCTATAGTTGCTGGCTTCTTCC
TGATGCAGAAGCCTTCTGAAGAAGTTGACAAGAAAATACTCATCGAAGGAGCACTGTCAC
GAATTACTGACTGTAAAAGGAACACCAGCAGCATTCAACAAGCCATCTTAAAATTAAGCA
CTCTTACAGTGGATTCCGAAGACTGCTGTGAGGCACTTGTCGTTGCCAGTGGCGTACACA
TACTGGAGAATCTAATGCATCGATCCAACGAGAAAGTCCGGAATCAAGTACTCTATACAC
TGTGGAACGTTGCACAATTCCCACATCTTCTATTAGTTCTTGCTTACGACTCACTGGTTA
ATACTTTGTTCACGGATCTGATAAGCGAGAAGAGTGAAGCGTCTTTCACCGCATGTGGTA
TTTTGAAGAAGTTGTGTGAGTCCGCAGGTAAGCATGAAATCCCTGAAATCCCTGGGCTTT
GTCAGGACATAACACGTCTGCGCACTGTGGTGGAATTGCGCGAGCGGCATGAAACAGGAG
AGGACGAGGTATCGACGCACGGAATTCCTTGAGGACAAATTGCGGCAGCTTAGGGAGATT
CGCGCCCTCTGCCAACTTATCGAAGAATTGATTGTCGCCCGGGGGTAAATTTTGTAGACA
GGCATGATGGAACCCCTTTGTGTCGGCAAGCAAATTCATTGTAGACTGGATCTTGCTTTG
TGGTTGTTTTGCATGAGTCGTGGTAGTAAGGCGGTAAACCATCTCTTTGCAGCAATGGCA
GCCCAAGCCTAAGCTTCTGCCGTTGGTCGACGTGCTAGTGCTCAAGGAGGAGACTACTCG
ACCACCCACTCGCAGATGCAGTACCCGCCAGTTCCACCGAGCTTTGGGCGGGCTATGATG
TGGAGCCATTAACCTGTACTCTAAAACTTCCCTCCTTTAT

Homology of Contig U35_7406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None