- Probe CUST_3615_PI390587928
- Source Contig U35_42402
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3615_PI390587928 | Hv_44K_v2 | TGCTGGCCAAGGTTGATATCCTCATCCTAGGTGGTGGTATGATCTTTACATTCTACAAGG | 518 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.249 | 0.334 | 1.321 | 2.037 | 1.060 | 1.024 |
| Raw | 2125.707 | 4235.893 | 15338.100 | 37180.467 | 6909.477 | 7222.597 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67009.1 | 1697 | 2e-24 | 649 - 708 | 100 | 60 / 60 | minus | ABC00230 ABC00917 ABC00994 ABC16294 ABC37244 |
| JLOC1 | JLOC1_44204.1 | 1874 | 8e-25 | 902 - 961 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34435 | 718 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00994 | 1364 | 3e-25 | 787 - 846 | 100 | 60 / 60 | minus | ABC00994 |
| Harvest21 | ABC00917 | 1645 | 3e-25 | 750 - 809 | 100 | 60 / 60 | plus | ABC00917 |
| Harvest35 | U35_42402 | 588 | 3e-25 | 519 - 578 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38455 | 718 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_384 | 1632 | 3e-25 | 761 - 820 | 100 | 60 / 60 | plus |
Contig Sequence (588 bp)
>U35_42402 588 Hv_44K_v2 GCCCAAGTTCAGCTTGAAGCCTCTTGTTCCTCGCTTGTCTGAGCTCCTTGGTCTTGAAGT ATGTTATGGGATGATAGCATCTTGCAACTCCGTTGTCTTTTTGAACTGGATTAACAGCAT TTATGTTTGTACATTGTTTCATGTGTGTCAATAGGTTGTGATGGCCCCTGACTGCATTGG TCAAGAAGTTGAGAAATTGGCTGCTGCTTTGCCAGATGGTGGTGTTCTACTTCTAGAGAA TGTTAGATTCTACAAGGAGGAAGAGAAGAACGAACCTGAGTTTGCTAAGAAGCTTGCATC AGTTGCTGACCTTTATGTAAATGATGCCTTCGGCACTGCACATAGGGCGCATGCTTCAAC CGAGGGTGTAACCAAGTTTTTGAGGCCTTCTGTTGCTGGCTTCCTCATGCAGAAGGAACT TGACTATCTTGTTGGAGCCGTTGCCAACCCAAAGAAGCCATTTGCTGCCATTGTTGGTGG ATCCAAGGTCTCATCTAAGATTGGTGTGATCGAGTCTCTGCTGGCCAAGGTTGATATCCT CATCCTAGGTGGTGGTATGATCTTTACATTCTACAAGGCCCAGGGATT
Homology of Contig U35_42402 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g07260.3 | 372 | 6e-95 | protein|phosphoglycerate kinase protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g05220.1 | 402 | 5e-98 | |
| Arabidopsis v10 | AT1G56190.1 | 478 | 6e-89 | Phosphoglycerate kinase family protein | chr1:21028403-21030454 FORWARD LENGTH=478 |