- Probe CUST_20717_PI390587928
- Source Contig U35_47301
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20717_PI390587928 | Hv_44K_v2 | GCATTGGTCAAGAAGTTGAGAAATTGGCTGCTGCTTTGCCAGATGGTGGTGTTCTACTTC | 506 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.363 | 0.403 | 1.393 | 2.014 | 1.120 | 1.062 |
| Raw | 1295.190 | 1998.307 | 6834.260 | 15347.777 | 3084.087 | 3154.787 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67009.1 | 1697 | 2e-24 | 994 - 1053 | 100 | 60 / 60 | minus | ABC00230 ABC00917 ABC00994 ABC16294 ABC37244 |
| JLOC1 | JLOC1_44204.1 | 1874 | 8e-25 | 557 - 616 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48209 | 566 | 3e-25 | 507 - 566 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34435 | 718 | 3e-25 | 120 - 179 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00994 | 1364 | 3e-25 | 1132 - 1191 | 100 | 60 / 60 | minus | ABC00994 |
| Harvest21 | ABC00917 | 1645 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | ABC00917 |
| Harvest21 | ABC00220 | 630 | 3e-25 | 136 - 195 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47301 | 566 | 3e-25 | 507 - 566 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42402 | 588 | 3e-25 | 174 - 233 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38455 | 718 | 3e-25 | 120 - 179 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_384 | 1632 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_70 | 630 | 3e-25 | 136 - 195 | 100 | 60 / 60 | plus |
Contig Sequence (566 bp)
>U35_47301 566 Hv_44K_v2 CCCACACGTCATCGGCACACGGCCACCACAAATCCCCCCGAATATTCCCTCCCATCGCGA ACTACGCCTTGGCCTCTCTATAAAGAAAACCGGAGCGCACGGGCAGCGTCGCCACATCCA TCCAAACAGAAGCCAAGCCAAGCCCATCGCCACTCCATTCCATCCACAACCTCGGCCAGA TCGCCGCCGATCAGATCCTCCGATCCTCCACGGGATGGCGACCAAGAGGAGCGTGGGCAC CCTCGGGGAGGCGGATCTCAAGGGGAAGAAGGTGTTCGTGCGCGCCGACCTCAACGTGCC GCTCGATGACGCCCAGAAGATCACCGACGACACCCGCATCCGCGCATCCATCCCCACCAT CAAGTACCTCCTCGAGAAGGGCGCCAAGGTCATCCTGGCCAGCCATCTGGGCCGCCCAAA AGGTGTCACCCCCAAGTTCAGCTTGAAGCCTCTTGTTCCTCGCTTGTCTGAGCTCCTTGG TCTTGAAGTTGTGATGGCCCCTGACTGCATTGGTCAAGAAGTTGAGAAATTGGCTGCTGC TTTGCCAGATGGTGGTGTTCTACTTC
Homology of Contig U35_47301 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g07260.3 | 372 | 2e-67 | protein|phosphoglycerate kinase protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g05220.1 | 402 | 3e-69 | |
| Arabidopsis v10 | AT1G79550.1 | 401 | 5e-57 | | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401 |