barSeed - Barley Seed Development Database

Probe ABC15584

Source Contig ABC15584

barSeed

Links

Affymetrix Source Sequence (948 bp)

>ABC15584 948
CACATTTAACCAAAGGCTAAAGTCAAGAGGGGGCATCATGTTCTTGATATTGGTTGCGGC
TGGGGAAGTTTAGCAATACAAGCGGTGAAGCAAACTGGGTGCAAATACACTGGAGTCACT
TTGTCCGCACAGCAGCACAAATACGCAGAGAGAATAGTAAGAGAAGCCGGCTTAGAGGAC
CACATAACTTTTCTGCTGTGCGACTACCGTCAAATACCACCTTGCAAGTATGATGCAATC
ATAAGCTGCGGCATGATCGAACATGTTGGCCATGAATATATGGACGAATTTTTTGCCTGT
TGTGAGTCTTACTTGGCTGAAGATGGCATATTGGTCCTCCAGTTCATCTCAGCTCCAGAG
GAACGGTACGAGCAATACAGAAGGAGGACGGACTTCATAAAGGAATACATATTTCCTGGC
GGCTGCCTTCCTTCTTTGGCCCGTGTAATGTCTGCCATGACCACGTCATCAAGGTTCAGC
ATAGAGCATGTGGAGAATATTGGGCCACATTACTACACGACTCTGATGCGCTGGAGGGAC
AACTTTATGATCAACAAAGATGAAATTTTGGCCCTGGGCTTTGATGACAAGTTCATGCGT
ATCTGGGAGTACTACCTCATATTCTCTGCGTCTTGCTTCAAGTCACGAACACTTGGAGAT
TACCAGGTTGTTTTCTCTCGTCCAGGCAACCGTCGGCTAGCCGTGCCTTGATAGCCGTCA
GATATCCTTGTCCGTTCAGCTATCGAACCATTAATCTTTTATAATTGCTAGCCTGTTCCA
CCTTTGCTTTAGTTATTTCTACGTATTTGCCAATAATCTTTGTTCCCTGATGGAACTGTA
GTGGGCTGCTGACAAACCAGCCAAGGATGTGTGTACTTTTATGCCTGATGCCCTTTTATG
TTCAGTATCTTTATTTTCTACGATCTGTAAATGTTTGAATAGTGTTAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355313	2886	0.0	1950 - 2844	99	891 / 895	CUST_27531_PI390587928 CUST_4037_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_62997.2	853	0.0	120 - 851	99	728 / 732	CUST_4037_PI390587928 CUST_3262_PI390587928	ABC09601 ABC15584
AK361555	3086	0.0	2091 - 2789	92	643 / 700	CUST_29842_PI390587928 CUST_29675_PI390587928 CUST_3262_PI390587928 CUST_3263_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_10873.2	2156	0.0	345 - 1032	92	633 / 688	None	ABC09600 ABC09601 ABC15584
MLOC_57906.2	3176	0.0	355 - 1049	91	639 / 700	CUST_3262_PI390587928 CUST_3263_PI390587928 CUST_29842_PI390587928 CUST_29675_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.3	3010	0.0	348 - 1042	91	639 / 700	CUST_3263_PI390587928 CUST_3262_PI390587928 CUST_29675_PI390587928 CUST_29842_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.7	2720	0.0	284 - 978	91	639 / 700	CUST_29842_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.6	3036	0.0	285 - 979	91	639 / 700	CUST_29842_PI390587928 CUST_29675_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.5	2955	0.0	292 - 986	91	639 / 700	CUST_29675_PI390587928 CUST_29842_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.8	3018	0.0	260 - 954	91	639 / 700	CUST_29675_PI390587928 CUST_29842_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_37138.3	2646	0.0	1705 - 2404	91	637 / 700	None	ABC09600 ABC09601 ABC15584
MLOC_37138.2	2757	0.0	1882 - 2581	91	637 / 700	None	ABC09600 ABC09601 ABC15584
MLOC_37138.1	3061	0.0	1978 - 2677	91	637 / 700	None	ABC09600 ABC09601 ABC15584
MLOC_37138.5	1353	0.0	411 - 1111	91	637 / 701	None	ABC09600 ABC09601 ABC15584
MLOC_37138.4	2645	0.0	1702 - 2403	91	637 / 702	None	ABC09600 ABC09601 ABC15584
MLOC_63588.6	2876	0.0	1893 - 2624	90	656 / 732	CUST_32590_PI390587928 CUST_5369_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_63588.8	2991	0.0	2104 - 2835	89	655 / 732	None	ABC09600 ABC09601 ABC15584
MLOC_63588.5	2929	0.0	2042 - 2773	89	655 / 732	None	ABC09600 ABC09601 ABC15584
MLOC_63588.9	1356	0.0	402 - 1133	89	655 / 732	CUST_32590_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_63588.1	3184	0.0	2162 - 2893	89	655 / 732	CUST_32590_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_63588.3	3218	0.0	2148 - 2879	89	655 / 732	CUST_32590_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_63588.7	3220	0.0	2223 - 2954	89	655 / 732	CUST_32590_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_63588.4	3201	0.0	2204 - 2935	89	655 / 732	CUST_32590_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_4763.2	2994	0.0	1996 - 2683	89	610 / 689	CUST_32593_PI390587928 CUST_32591_PI390587928 CUST_1545_PI390587928	ABC09600 ABC09601 ABC15584 ABC37733
MLOC_4763.1	2951	0.0	324 - 1011	89	610 / 689	CUST_1545_PI390587928 CUST_32591_PI390587928 CUST_32593_PI390587928	ABC09600 ABC09601 ABC15584 ABC37733
MLOC_37138.6	614	0.0	64 - 611	91	499 / 548	None	ABC09600 ABC09601 ABC15584
MLOC_10873.1	3490	5e-57	1436 - 1601	91	151 / 166	None	ABC09600 ABC09601 ABC15584
MLOC_10873.3	372	5e-161	2 - 372	94	350 / 371	None	ABC09600 ABC09601 ABC15584
MLOC_57906.4	2971	1e-82	718 - 948	91	214 / 236	CUST_29675_PI390587928 CUST_29842_PI390587928 CUST_3263_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.1	2965	1e-82	725 - 955	91	214 / 236	CUST_3263_PI390587928 CUST_3262_PI390587928 CUST_29675_PI390587928 CUST_29842_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_62997.1	859	6e-81	124 - 290	99	166 / 167	None	ABC09601 ABC15584
MLOC_57938.1	2281	5e-82	229 - 394	100	166 / 166	CUST_27531_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_57938.2	2284	5e-82	229 - 394	100	166 / 166	CUST_27531_PI390587928	ABC09600 ABC09601 ABC15584
MLOC_57938.3	1105	5e-82	3 - 168	100	166 / 166	None	ABC09600 ABC09601 ABC15584