barSeed - Barley Seed Development Database

Probe CUST_3262_PI390587928

Source Contig U35_4181

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3262_PI390587928	Hv_44K_v2	GAAATTTTGGCCCTGGGCTTTGATGACAAGTTCATGCGTATCTGGGAGTACTACCTCATA	561	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.686	3.619	3.548	0.756	0.901	0.802
Raw	20.863	47.184	37.439	11.282	3.202	3.288

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355313	2886	7e-23	2499 - 2558	98	59 / 60	plus	ABC09600 ABC09601 ABC15584
MLOC	MLOC_62997.2	853	7e-23	506 - 565	98	59 / 60	plus	ABC09601 ABC15584
MLOC	AK361555	3086	3e-22	2640 - 2698	98	58 / 59	plus	ABC09600 ABC09601 ABC15584
MLOC	MLOC_57906.4	2971	3e-22	439 - 497	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.1	2965	3e-22	446 - 504	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.2	3176	3e-22	446 - 504	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.3	3010	3e-22	439 - 497	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.7	2720	3e-22	375 - 433	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.6	3036	3e-22	376 - 434	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.5	2955	3e-22	383 - 441	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.8	3018	3e-22	351 - 409	98	58 / 59	minus	ABC09600 ABC09601 ABC12308 ABC15584
JLOC1	JLOC1_41254.1	1049	4e-23	619 - 678	98	59 / 60	plus
JLOC1	JLOC1_37603.4	3100	1e-22	2557 - 2615	98	58 / 59	plus
JLOC1	JLOC1_37603.3	2999	1e-22	2456 - 2514	98	58 / 59	plus
JLOC1	JLOC1_37603.2	3036	1e-22	2493 - 2551	98	58 / 59	plus
JLOC1	JLOC1_37603.1	2937	1e-22	2394 - 2452	98	58 / 59	plus
Harvest21	ABC15584	948	3e-25	562 - 621	100	60 / 60	plus	ABC15584
Harvest21	ABC16268	1192	5e-23	1054 - 1112	98	58 / 59	plus
Harvest35	U35_4181	949	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_49310	478	1e-23	364 - 423	98	59 / 60	minus
Harvest35	U35_4180	1520	5e-23	1054 - 1112	98	58 / 59	plus

Contig Sequence (949 bp)

>U35_4181 949 Hv_44K_v2
CACATTTAACCAAAGGCTAAAGTCAAGAGGGGGCATCATGTTCTTGATATTGGTTGCGGC
TGGGGAAGTTTAGCAATACAAGCGGTGAAGCAAACTGGGTGCAAATACACTGGAGTCACT
TTGTCCGCACAGCAGCACAAATACGCAGAGAGAATAGTAAGAGAAGCCGGCTTAGAGGAC
CACATAACTTTTCTGCTGTGCGACTACCGTCAAATACCACCTTGCAAGTATGATGCAATC
ATAAGCTGCGGCATGATCGAACATGTTGGCCATGAATATATGGACGAATTTTTTGCCTGT
TGTGAGTCTTACTTGGCTGAAGATGGCATATTGGTCCTCCAGTTCATCTCAGCTCCAGAG
GAACGGTACGAGCAATACAGAAGGAGGACGGACTTCATAAAGGAATACATATTTCCTGGC
GGCTGCCTTCCTTCTTTGGCCCGTGTAATGTCTGCCATGACCACGTCATCAAGGTTCAGC
ATAGAGCATGTGGAGAATATTGGGCCACATTACTACACGACTCTGATGCGCTGGAGGGAC
AACTTTATGATCAACAAAGATGAAATTTTGGCCCTGGGCTTTGATGACAAGTTCATGCGT
ATCTGGGAGTACTACCTCATATTCTCTGCGTCTTGCTTCAAGTCACGAACACTTGGAGAT
TACCAGGTTGTTTTCTCTCGTCCAGGCAACCGTCGGCTAGCCGTGCCTTGATAGCCGTCA
GATATCCTTGTCCGTTCAGCTATCGAACCATTAATCTTTTATAATTGCTAGCCTGTTCCA
CCTTTGCTTTAGTTATTTCTACGTATTTGCCAATAATCTTTGTTCCCTGATGGAACTGTA
GTGGGCTGCTGACAAACCAGCCAAGGATGTGTGTACTTTTATGCCTGATGCCCTTTTATG
TTCAGTACATACATTGCATGGTATTGTATCTTTATTTTTTACGATCTGT

Homology of Contig U35_4181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29220.1	466	2e-124	protein\|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
Brachypodium v1_2	Bradi5g02490.1	795	8e-117
Arabidopsis v10	AT3G23510.1	867	4e-101	Cyclopropane-fatty-acyl-phospholipid synthase \| chr3:8428071-8433159 FORWARD LENGTH=867