barSeed - Barley Seed Development Database

Probe ABC12308

Source Contig ABC12308

barSeed

Links

Affymetrix Source Sequence (1547 bp)

>ABC12308 1547
GCGGAAACTGGGGCTCGCCTTCTGGTAACAAGGTTTCTCAACCAATATGTAACCATCGGT
AACATGACCATTCTTGAAGAAGGTGGCACTATGTACAGTTTTGGTGAAGTAGACAAAAAA
TGCCTTGTCAAAACTGTCTTGCGAGTTCATGACCCTCTCTTCTACTGGAAGGTCGCCACC
GAAGCAGACCTTGGTATGGCAGACGCATATATCAACGGTTATTTTTCTTTTGTTGATAAA
AGAGAAGGGCTCCTGAATCTTTTCCTGATTCTCATTGCTAACAGAGATGCGCAGAAGAGT
AATAACAGCGCTGCCAGTAAAAGGGGTTGGTGGACGCCCATGCTTTTAACAGCTGGGATT
GCATCGGCAAAATATTTCCTCCGCCACATCTCAAGGAAGAATACTGTCACACAAACTCGC
CGAAACATCTCTCAGCACTATGATCTGAGTAATGATTTCTTCTCGCTTTTCCTGGATCCA
TCGATGACTTACTCTTGTGCAGTATTCAAGGTGGAAGATGAAAGCTTAGAAGTTGCCCAG
CGACGTAAAGTTAATCTTCTAATCAAGAAGGCTAAAGTGGAGCGGAATCATCATGTCCTT
GAAATCGGTAGCGGCTGGGGCAGCTTGGCGATGCAAGTGGTGAAGCAAACTGGATGCAAA
TATACAGGGATTACACTATCTGAGGAGCAACTTAAATACGCTGAAATGAAAGTGAAGGAA
GCTGGCTTGGAGGATCGTATAACTTTCCTGCTGTGTGACTACCGTCAAATACCAAGTCGG
AGTAAGTACGACAGGATCATATCATGCGAAATGATTGAAGGGGTTGGTCATGAATTCATG
GATGATTTCTTTGGTTGTTGCGAGTCCCTATTGGCTCCAGATGGTCTATTTGTCCTCCAG
TTTATATCGATTCCAGAAGAACGGTATGAGGAATACAGGAGAAGTTCAGACTTCATAAAG
GAATACATCTTTCCAGGGGGTTGCCTTCCTTCCTTGGCCCGGATCACGTCTGCCATGTCC
GCTGCGTCAAGGCTCTGCATCGAGCAGGTTGAGAACATCGGATACCATTACTACCCGACG
CTGATACGCTGGAGGGATAACTTTATGGCCAACAAAGATGCAATTTTGGCTCTGGGATTT
GACGACAAGTTCATTCGTGTATGGGAGTATTATTTCATATACTGCGCGGCCGGTTTCAAG
TCACGGACGCTTGGAACTTACCAGATTGTATTTTCGCGACCTGGCAATGACAAGCTGGCC
AACACCGATAACCCCTTCGCAAGTCTTCCTGCAGCCTAGCCTTAGGTCACTGGACAAGTG
AACGACCATCCATATTCATACCTACATATAATAGCATGCGTCTATTTATTACAAAGTAAG
GTTGAGAAATTGTAATTCCATAGGAGTGTGTGAAAATATTGACCATTGTATGAACTATTA
GTGCTACCACAGGGTGATTCGTTGATTGATTCATGTAACACATTTGTGGGTCGATCGGTT
GGCTCAAGGTTGAGGTTTTCTTACTCAACATTTTTCTCCTCTCGGCC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360038	3048	0.0	1433 - 2978	99	1545 / 1547	CUST_6046_PI390587928 CUST_23326_PI390587928	ABC12308 ABC50457
MLOC_45372.1	702	0.0	1 - 674	95	646 / 683	None	ABC12308
MLOC_38521.1	533	0.0	1 - 533	99	527 / 533	None	ABC12308 ABC50457
MLOC_57906.3	3010	0.0	371 - 1599	78	974 / 1249	CUST_29842_PI390587928 CUST_3263_PI390587928 CUST_3262_PI390587928 CUST_29675_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.7	2720	0.0	307 - 1535	78	974 / 1249	CUST_3262_PI390587928 CUST_29842_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.6	3036	0.0	308 - 1536	78	974 / 1249	CUST_29842_PI390587928 CUST_3262_PI390587928 CUST_29675_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.5	2955	0.0	315 - 1543	78	974 / 1249	CUST_29675_PI390587928 CUST_29842_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_45372.2	752	6e-88	1 - 198	96	191 / 198	None	ABC12308
MLOC_65493.1	2095	9e-146	1739 - 2061	96	309 / 323	CUST_6046_PI390587928	ABC12308
MLOC_65493.3	1970	9e-146	1646 - 1968	96	309 / 323	CUST_6046_PI390587928	ABC12308
MLOC_65493.2	1923	9e-146	1558 - 1880	96	309 / 323	CUST_6046_PI390587928	ABC12308
MLOC_65493.4	1930	9e-146	1606 - 1928	96	309 / 323	CUST_6046_PI390587928	ABC12308
MLOC_57906.1	2965	7e-142	754 - 1512	79	611 / 774	CUST_29675_PI390587928 CUST_29842_PI390587928 CUST_3263_PI390587928 CUST_3262_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.9	961	1e-114	1 - 605	79	486 / 613	None	ABC09600 ABC09601 ABC12308
MLOC_57906.10	2034	2e-107	18 - 581	79	453 / 571	CUST_29842_PI390587928 CUST_29675_PI390587928	ABC09600 ABC09601 ABC12308
MLOC_28652.2	187	2e-82	3 - 187	97	179 / 185	None	ABC12308
MLOC_28652.1	377	2e-73	117 - 282	97	161 / 166	None	ABC12308
MLOC_57906.4	2971	3e-51	1341 - 1622	80	227 / 284	CUST_29842_PI390587928 CUST_3263_PI390587928 CUST_3262_PI390587928 CUST_29675_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.2	3176	3e-51	1442 - 1723	80	227 / 284	CUST_3262_PI390587928 CUST_29842_PI390587928 CUST_3263_PI390587928 CUST_29675_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584
MLOC_57906.8	3018	3e-51	1347 - 1628	80	227 / 284	CUST_29842_PI390587928 CUST_3262_PI390587928 CUST_29675_PI390587928	ABC09600 ABC09601 ABC12308 ABC15584