barSeed - Barley Seed Development Database

Probe CUST_3263_PI390587928

Source Contig U35_4180

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3263_PI390587928	Hv_44K_v2	GGAACTGGTTTGTTGCTTTGATATCTATTAGACATACGTGATGTCTTGGTTTGTGATTAA	1446	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.776	2.761	1.892	0.375	0.259	0.230
Raw	73.312	120.807	68.576	21.698	3.438	3.471

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57906.4	2971	2e-23	47 - 104	100	58 / 58	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.1	2965	2e-23	54 - 111	100	58 / 58	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.2	3176	2e-23	54 - 111	100	58 / 58	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	MLOC_57906.3	3010	2e-23	47 - 104	100	58 / 58	minus	ABC09600 ABC09601 ABC12308 ABC15584
MLOC	AK361555	3086	3e-21	3033 - 3086	100	54 / 54	plus	ABC09600 ABC09601 ABC15584
JLOC1	JLOC1_37603.4	3100	1e-23	2950 - 3007	100	58 / 58	plus
JLOC1	JLOC1_37603.3	2999	1e-23	2849 - 2906	100	58 / 58	plus
JLOC1	JLOC1_37603.2	3036	1e-23	2886 - 2943	100	58 / 58	plus
JLOC1	JLOC1_37603.1	2937	1e-23	2787 - 2844	100	58 / 58	plus
Harvest35	U35_4180	1520	3e-25	1447 - 1506	100	60 / 60	plus

Contig Sequence (1520 bp)

>U35_4180 1520 Hv_44K_v2
GCTTGATATTTGTGGAAGAAGGAGGTCGTGTGTTCAGCTTTGGTAAAGCTTGCGACAAGT
GCCGTATAAAATCTGTCATCCGAGTTCATGAGCCCTTGTTCTATTGGAAGGTTGCAATAG
AAGGAAATCTTGGCTTGGCAGAAGCCTATATTAATGGTTGTTTCTCTTTTCTTGACAAGA
GAGAAGGCCTTCTGAATCTTTTCCTGATTCTCATTGCTAACAGAGATGAGCGTAGGAGCA
ACCGGATTGCTAGAAAAGGGGGTCGGTGGACACCCTTGCATGTGATAGCTAGGTTGGCAC
ACGCTAGATACATTTTGCGCGAAGTCTCAAGGAAGAACACTGTGACACAGACTCGTCGAA
ACATCTCTCTGCACTATGATCTTAGTAATGATTTTTTCTCGCTTTTCCTGGATAAATCCA
TGACCTACTCTTGTGCAGTTTTCAAGATGGAGAACGAAAGCTTAGAAGTAGCCCAACATC
GTAAACTTAGCCTTCTAATCAACAAGGCTAAAATCAAGAGGGGAGATCATGTTCTTGATA
TCGGTAGCGGCTGGGGAAGTTTAGCAATACAAGCAGTTAAGCAAACTGGTTGCAAATACA
CTGGAGTCACTTTGTCAGCGGAGCAACATAAATACGCAGAGAGAAAAGTCAGAGAAGCTG
GCTTAGAGGACCACATAACGTTTCTGCTGTGCGACTACCGGCAAATACCACCTTGCAAGT
ATGATGCAATCATAAGCTGCGGTATGATTGAGCATGTTGGCCATGAATACATGGATGAAT
TTTTTGCTTGTTGCGAGTCTTACTTGGCTGAAGATGGCATATTGGTCCTTCAGTTCATCT
CAGCCCCAGAGGAACGGTACGAGCAATACAGAAGAAGGACAGACTTCATAAAAGAATATA
TATTTCCTGGCGGTTGCCTTCCTTCATTGGCCCGTGTAATGTCTGCCATGACCACGTCAT
CAAGGTTCAGCATGGAGCATGTTGAGAATATTGGGCCCAATTACTATACAACTCTGATGC
ACTGGAGAGACAACTTCATTGCCAACAAAGACAAAATTTTGGCCCTGGGCTTTGATGACA
AGTTTATGCGTATCTGGGAGTACTACCTCATATTCTCTGCGGCTTGTTTCAAGTTACGAG
CTCTTGGAGATTACCAGGTTGTTTTCTCTCGTCCAGGCAACCGGCGGCTAGGCCTGCCTT
GATGGCTGAACGCAACATATCGTTCTCCGGTCAGCTGTAGAATGGTTGCTGCTCGATAGC
CTACGATCTTCTAATCAGTCAACCCTCGAATGGTTTCTTCATACGGGCAGCCTAATCAGG
TGGTTTAGTGATCTATCTTCTTGTTTTAATCATGAAATGTTTAGTTTTCATGGCTATCAA
TAAACTGTATGTGCGTATGCAAGTGCTACCTTAGCCTTGTCAATAGAATTTGAGAATTGT
ACGGAAGGAACTGGTTTGTTGCTTTGATATCTATTAGACATACGTGATGTCTTGGTTTGT
GATTAAAAAAAAAAAAAAAA

Homology of Contig U35_4180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29220.1	466	0.0	protein\|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
Brachypodium v1_2	Bradi5g02490.1	795	0.0
Arabidopsis v10	AT3G23510.1	867	7e-169	Cyclopropane-fatty-acyl-phospholipid synthase \| chr3:8428071-8433159 FORWARD LENGTH=867