- Probe CUST_4037_PI390587928
- Source Contig U35_49310
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4037_PI390587928 | Hv_44K_v2 | TGGGCTTTGATGATAAGTTCATGCGTATCTGGGAGTACTACCTCATATTCTCTGCGTCTT | 350 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.036 | 3.064 | 2.446 | 0.578 | 0.749 | 0.667 |
| Raw | 18.296 | 47.517 | 30.929 | 10.240 | 3.514 | 3.438 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355313 | 2886 | 2e-24 | 2512 - 2571 | 100 | 60 / 60 | plus | ABC09600 ABC09601 ABC15584 |
| MLOC | MLOC_62997.2 | 853 | 2e-24 | 519 - 578 | 100 | 60 / 60 | plus | ABC09601 ABC15584 |
| JLOC1 | JLOC1_41254.1 | 1049 | 8e-25 | 632 - 691 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15584 | 948 | 1e-23 | 575 - 634 | 98 | 59 / 60 | plus | ABC15584 |
| Harvest35 | U35_49310 | 478 | 3e-25 | 351 - 410 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_4181 | 949 | 1e-23 | 575 - 634 | 98 | 59 / 60 | plus |
Contig Sequence (478 bp)
>U35_49310 478 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACACTATTCAAACATTTACAGATCGTAGAAAATAAAGATACA ATACCATGCAATGTATGTACTGAACATAAAAGGGCATCAGGCATAAAAGTACACACATCC TTGGCTGGTTTGTCAGCAGCCCACTACAGTTCCATCAGGGAACAAAGATTATTGGCAAAT ACGTAGAAATAACTAAAGCAAAGGTGGAACAGGCTAGCAATTATAAAAGATTAATGGTTC GATAGCTGAACGGACAAGGATATCTGACGGCTATCAAGGCACGGCTAGCCGACGGTTGCC TGGACGAGAGAAAACAACCTGGTAATCTCCAAGTGTTCGTGACTTGAAGCAAGACGCAGA GAATATGAGGTAGTACTCCCAGATACGCATGAACTTATCATCAAAGCCCAGGGCCAAAAT TTCATCTTTGTTGATCATGAAGTTGTCCCTCCAGCGCATCAGAGTCGTGTAGTAATGT
Homology of Contig U35_49310 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |