barSeed - Barley Seed Development Database

Probe ABC09131

Source Contig ABC09131

barSeed

Links

Affymetrix Source Sequence (1671 bp)

>ABC09131 1671
GCGGGGCTGGCGATGACGCCCGGCGGAGGCGACGAGGAGAGGGACCTCACCATCAGCGGG
CTCGCCACGTACCAGCCATATGACGGGATACTTGCCTTGAAGATGGCTCTTGCTGGATTT
ATGAGGCAAATCATGCAAGAGTCGGTATCCTTTGATCCATCTCAAATGGTGATAACATCT
GGTGCGACGCCTGCAATGGAAATACTGAGCTTCTGTATTGCTGATCCAGGAAATGCATTT
CTTGTTCCGTCACCATACTACCCTGGATGGGACAGGGACATAAAATGGCGAACTGGTATT
GAGTTGATACCCGTTCCTTGCCGGAGCACCGACAACTTCAACATCAGTATCACTGCTCTA
GAAATAGCCTATAACCAGGCAAAGAAGCGAGGAGTAAGGGTTCGTGGGGTTCTCATATCT
AATCCTTCCAACCCTACAGGAAGCTTTGTGCCCAAGCAAACACTGAGTGATCTTCTGGAC
TTTGCTACAGAGAAGAACATACACTTAATTTCTGATGAAGTGTTTGCCGGTTCAACATTT
GGAAGTGGTGAATTTGTCAGCGTGGCAGAGGTTGTGAACGAGCTAGAAGACTTTGACAGA
GGCAGGGTTCACATAATCTACGGTCTCTCAAAAGACCTATCTCTGGCAGGGTTTCGGGTT
GGAGTCATATATTCGTACAATGAAAGCATCGTGGAGGCAGCCGCTAAGATTGCTAGATTC
TCATCCGTGTCAACCCCGACCCAGCGCCTGCTTGTTGCCATGCTTTCAGACCAGAAGTTT
ATCTCGAATTACCTGAAAGTTAACAGAGAGAGGCTGCACAAGGCGTACAATTTGCTCGTT
GATGCTTTGAAACAGGTGGGCGTCGAGTGCTTCAAGAGCAGCGGAGGATTCTACTGCTGG
GCGGATATGAGCAAGTTCATCCGGTCTTACAGCGAGAAAGGGGAACGCAGGCTTTGGGAC
AGGCTGTTGGAGGAGGCGAAGGTCAATGTCACCCCAGGTTCATCTTGCCATTGCATTGAG
CCTGGATGGTTTAGGTGCTGTTTCACAACGTTGAGGGAGCAGGATATTCCTGTGGTGGTG
GAGAGGCTCAGGAGAGTCACAGATGGCCACAAATCAAACCGTTGAGATGTCCAAAGTACT
CTTTTTGGCCTGTAGGGTGTCGAAAAATAACTGCTTCGCCAGGTGCTTCACAAGAAACGC
AGGAGCACACAGGAAAAAAAATGCCTTAACCTGATCTGTTCCGAACTCCGATCAGAGAAT
TTCCATCTTGGCATCTACCATCGGGGGAGTTTTGAAGCTGGCAGTTGGTGGAAGCAGTGG
CGCATGTCTTCGGTGGTGGAACGAAGAACAGGGATCATGTTCATATTGGTCATGCCCCCT
CCGTTCCTCCGCTCCTGTTGAATCCAAGCGTGGTAGCTCTTTGGAAGGTTGTAAATTGTT
GATCCTCGTCTGCTTCTCTCGTAGGTGTCGCATGCGGTAAATTGCCCGTCTCATGATAGT
CCGAGTCAAAAATCAGTGTGTTCATTCACCTATTCGCTCCTGTTACCCTTCTTCCTCTCT
CTCCTGGCAATTTTGTTCTTTGGTAACATAAATTAGAGTCGATGAACTTGGTTTCTTCCG
TTGCTGTCATCATCTGTAAAGTATCCGGTTTGTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK353643	2294	0.0	589 - 2244	99	1653 / 1656	CUST_8013_PI390587928	ABC09131 ABC49794
MLOC_6706.1	2595	0.0	1204 - 2594	99	1385 / 1391	CUST_4317_PI390587928	ABC09130 ABC09131
AK376837	3868	0.0	3282 - 3868	99	586 / 590	CUST_32934_PI390587928 CUST_6734_PI390587928	ABC04561 ABC09131 ABC22323 ABC44348
MLOC_22739.1	752	5e-134	480 - 745	99	264 / 266	CUST_8013_PI390587928	ABC09131 ABC49794
MLOC_24876.1	416	1e-124	160 - 414	98	251 / 255	None	ABC09131 ABC49794
MLOC_3495.1	438	1e-120	185 - 438	98	248 / 254	None	ABC09131 ABC49794
MLOC_46342.1	157	8e-72	1 - 157	98	154 / 157	None	ABC09131 ABC49794
AK374635	978	9e-62	615 - 759	97	140 / 145	CUST_5182_PI390587928 CUST_2195_PI390587928	ABC01658 ABC01659 ABC01661 ABC01664 ABC09131 ABC38555 ABC39899 ABC49794
MLOC_33168.1	325	4e-60	121 - 265	96	139 / 145	CUST_2195_PI390587928	ABC09131 ABC49794
MLOC_46342.2	151	7e-58	20 - 151	98	129 / 132	None	ABC09131 ABC49794
MLOC_42413.1	363	1e-55	62 - 204	94	135 / 143	CUST_2195_PI390587928	ABC09131 ABC49794