barSeed - Barley Seed Development Database

Probe ABC38555

Source Contig ABC38555

barSeed

Links

Affymetrix Source Sequence (485 bp)

>ABC38555 485
CCTGGCCAGTTTGGTTCAGCTTTGAGCTGCCCACCGCAGAGTGGGAGGACGGCATGCTCA
TGAACATCGAGGTCGGATCAAGTATGATGGTGCACTGCGGCATGTGGTGGCCTATTTTTT
TTGTAGTGGGTTATGATGATAGAAATATATTGACCCTGATGTGACAAAAAGTCAGGAGTG
CTTGGAGAAGGTTGCCAAAACGGTCTCCTTCCTCGCGCAGCCTGAAGGCTCATTCCTGCT
GTTGCTCACAGTTCAAAAGGACCGCGCGCTGGAGCTCCTAAATGTGTGCCCCTTCTACTT
CGTTTACTTATGTGGCGTGAAGACATAAAGCAAACCTTTGGAGCCATAGTTGTCCTTTTT
GTCATCTAAAATAATAATGGTAACATATTAATGCAAACAAAATAATATTGTAGCTCAAAA
AATTGTATGTGAATAATGAATGGATGCTATGGAACTATATTTGTTAGGAAAAAAAAAAAA
AAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373035	4269	5e-54	2588 - 2718	96	126 / 131	CUST_16965_PI390587928 CUST_2201_PI390587928	ABC01658 ABC01659 ABC01661 ABC13588 ABC38555 ABC39899 ABC49794
AK369280	2964	4e-75	2442 - 2610	97	164 / 169	CUST_16965_PI390587928 CUST_16362_PI390587928	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC40523 ABC49794
MLOC_62484.1	228	6e-103	4 - 222	98	214 / 219	None	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
AK374635	978	1e-99	764 - 978	97	209 / 215	CUST_5182_PI390587928 CUST_2195_PI390587928	ABC01658 ABC01659 ABC01661 ABC01664 ABC09131 ABC38555 ABC39899 ABC49794
MLOC_1994.1	284	5e-99	31 - 251	96	213 / 221	CUST_2201_PI390587928	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_35490.1	224	4e-95	3 - 218	96	208 / 217	None	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_29719.1	357	5e-94	33 - 252	95	210 / 221	None	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_81662.1	306	8e-92	105 - 306	97	196 / 202	CUST_5182_PI390587928 CUST_2201_PI390587928	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_33138.1	325	2e-88	33 - 250	94	207 / 221	CUST_2201_PI390587928	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_62623.1	219	4e-85	9 - 219	94	201 / 214	None	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_76678.1	185	1e-84	1 - 185	97	180 / 185	None	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_3897.1	244	6e-83	4 - 186	97	178 / 183	CUST_5182_PI390587928 CUST_2201_PI390587928	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_65961.1	208	5e-74	3 - 183	94	171 / 181	None	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_80450.1	176	1e-64	1 - 150	97	145 / 150	CUST_2201_PI390587928	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_53250.1	485	9e-62	62 - 190	100	129 / 129	None	ABC38555
MLOC_26582.1	394	4e-55	258 - 394	95	132 / 139	CUST_5182_PI390587928	ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC49794
MLOC_27354.1	377	9e-52	164 - 292	95	123 / 129	None	ABC38555