barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16965_PI390587928Hv_44K_v2TACCTACTAGCGGTCATATCCTTCACATGGTACAAATCCTGATACACTTTATAGTATTTT677GeneList: brown4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.7821.0721.5031.1990.7440.641
Raw 38.08626.91644.34852.67111.97111.456



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36928029642e-241513 - 157210060 / 60plus ABC01658 ABC01659 ABC01661 ABC38555 ABC39899 ABC40523 ABC49794
MLOCAK37303542692e-241659 - 171810060 / 60plus ABC01658 ABC01659 ABC01661 ABC13588 ABC38555 ABC39899 ABC49794
MLOCMLOC_46190.211062e-24627 - 68610060 / 60minus None
Harvest21ABC107029893e-25799 - 85810060 / 60plus
Harvest35U35_36668683e-25678 - 73710060 / 60plus



Contig Sequence (868 bp)

>U35_3666 868 Hv_44K_v2
GAACATGTACAGATAATGAAGATAAACTTTTAGATCAGTGCTACTTATTCTAAGCCTAAA
GGATTTCCAGTTAACTTAGTATTTTTAACAAATGTGGTTCATCAGCAAGCTATATTAAAT
AACAATCCAGATTTATATACATAACTATTATACAGTGCCAAGACTTCCATTGTGTGTATG
AATGTGCACATATCCAGATTTTTCTGAATATCAGTATACATATATTTTTTATAGATGTTT
AAAACATGGAATTGCTGCCACATGTGTTTGATACAATATATGTAGTATATGTCATACCTG
ATGCAGTGTAATACAAATAAATATATAGGTAATATATGCACTTTATAGAAAATAAATATA
TGTTATATACTACTACCGAATGATTTTATCCAAATGTTGTTGGTTCATGCATACCTAAAT
GTAATGTTTTCTTACGCCACCCATCTTATTTGAGTTATTACATTTACATTATTGGATTTT
GGAGAAAATTTGTTGCATCAAAATGCTTAGCTTACTCCCAGTCTCTCCTCATAACGAGGT
TGAAGTATTAGGTAATACCATTGTTTAGCACATAACTTATTACATTATGAATTTTGGTGT
GGCTTTCGATTTTATTTTTGTGGACATTATTTTTACACATGCAGTCATACCACCTTTCCG
TTATCTACCTCTGATTATACCTACTAGCGGTCATATCCTTCACATGGTACAAATCCTGAT
ACACTTTATAGTATTTTTGTTATAATTACTTTCATGTAAATCCAAACTATTATAGTTACT
GAAATTAATTGGACATTTATTTAAGCCATTTAACAAAGCGGAGCTCCATTTGCTAGGGTT
CGCAGGTCATGAGATGAGGTAAACTAAC



Homology of Contig U35_3666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None