- Probe CUST_6734_PI390587928
- Source Contig U35_38507
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6734_PI390587928 | Hv_44K_v2 | ATAATATTCATTGATGAGGTTGATGCTATCGCCACTGCTCGATTCGATGCTCAGACTGGG | 534 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.759 | 1.011 | 1.983 | 2.248 | 0.998 | 0.849 |
| Raw | 716.878 | 1485.612 | 2559.437 | 4619.563 | 723.994 | 664.192 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78835.1 | 656 | 2e-24 | 383 - 442 | 100 | 60 / 60 | plus | ABC04561 ABC44348 |
| MLOC | AK376837 | 3868 | 3e-21 | 863 - 922 | 97 | 58 / 60 | plus | ABC04561 ABC09131 ABC22323 ABC44348 |
| MLOC | MLOC_53599.1 | 378 | 3e-21 | 244 - 303 | 97 | 58 / 60 | plus | ABC04561 |
| JLOC1 | JLOC1_52535.1 | 747 | 8e-25 | 396 - 455 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34454.1 | 357 | 2e-21 | 244 - 303 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC34512 | 621 | 3e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04561 | 1714 | 6e-22 | 876 - 935 | 97 | 58 / 60 | plus | ABC04561 |
| Harvest35 | U35_38507 | 621 | 3e-25 | 535 - 594 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1446 | 1722 | 6e-22 | 876 - 935 | 97 | 58 / 60 | plus |
Contig Sequence (621 bp)
>U35_38507 621 Hv_44K_v2 GGTCCGTGCCCCTCGTCATCGGCCAGTTCATGGAGATGGTCGACGGCAACAACGGCATCG TCGGATCCACCACCGGGAGCAACTACTACGTGCGGATCCTCAGCACCATCAACCGCGAGC TGCTCAAGCCGTCGGCGTCGGTCGCCCTGCACCGCCACTCCAACGCGCTCGTCGACGTGC TGCCGCCCGAGGCCGACTCCAGCATCTCGCTGCTCGCTTCGTCGGAGAAGCCCAACGTCC TATATTCGGACATTGGAGGATGTGATATTCAAAAGCAAGAAATTCGGGAGGCAGTTGAGC TACCATTGACACACCATGAGTTGTACAAGCAGATTGGTATTGATCCTCCAAGAGGGGTGC TGCTCTATGGTCCTCCAGGCACTGGGAAGACCATGCTTGCTAAAGCTGTGGCACATCATA CAACTGCTGCTTTTATCAGAGTGGTTGGTTCTGAATTTGTGCAGAAGTACCTTGGGGGAG GGCCCAAGGATGGTTCGAGATGTATTCCGCTTAGCTAAAGAGAATGCCCCAGCTATAATA TTCATTGATGAGGTTGATGCTATCGCCACTGCTCGATTCGATGCTCAGACTGGGGCTGAC CGAGAAGTTCAGCGTATTCTG
Homology of Contig U35_38507 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g21970.1 | 420 | 3e-109 | protein|26S protease regulatory subunit 6B, putative, expressed |
| Brachypodium v1_2 | Bradi3g10720.1 | 420 | 2e-110 | |
| Arabidopsis v10 | AT5G58290.1 | 408 | 7e-107 | | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408 |