barSeed - Barley Seed Development Database

Probe ABC07663

Source Contig ABC07663

barSeed

Links

Affymetrix Source Sequence (1626 bp)

>ABC07663 1626
CCCCGCCCGGCCACCCAAGCCAAAGCATCCTCTCCCGAATCTCTCTCTCCTCCCCTCTCA
TTGCCTCCTCCCCCCCCCCCCCCTCCCCCAGGACGCGCGCGGCACAGATCCGTCCGTCCG
TACGCGGCCATGGCCCCCGCAATGAGGCCGGAGCAGGAGGCGAGCTGCAAGGCCACCGAG
GACCACCGCCGCTCCGAGTTCGACGCCGCCAAGCCGCCGCCCTTCCGCATCGGCGACGTC
CGCGCCGCCGTGCCGCCCCACTGCTGGCGCAAGAGCCCCCTGCGCTCCCTCTCCTACGTC
GCCCGCGACGTCGCCGTCGTCGCGGCGCTCGCCGCCGCCGCGTGGCGGGCCGACACCTGG
GCCCTCTGGCCGCTCTACTGGGCCGTCCAGGGCACCATGTTCTGGGCGCTCTTCGTCCTC
GGCCACGACTGCGGTCACGGGAGCTTCTCGGACAGCGGCACGCTCAACAGCGTCGTCGGC
CACCTGCTACACACCTTCATCCTCGTCCCATACAACGGCTGGAGGATCAGCCACAGAACG
CACCATCAGAACCATGGCCACATCGAAAAGGACGAGTCATGGCACCCGATCACTGAGAAG
GTGTACCAGAAATTGGAACCACGGACAAAGACACTGCGCTTCTCAGTACCATTCCCGCTG
CTGGCTTTTCCTGTTTACCTCTGGTACAGAAGCCCGGGCAAGGAAGGCTCACACTTCAAC
CCGAGCAGCGATCTGTTTACCCCCAAGGAGAGGCGTGATGTGATCATCTCCACCACCTGC
TGGTTCACGATGATTGCGCTGCTCATCGGCATGGCGTGTGTCTTTGGCCTGGTACCGGTG
CTCAAGCTGTACGGGGTTCCATACATTGTGAATGTCATGTGGCTTGATTTGGTGACATAT
CTTCACCACCATGGTCACCAGGACCTCCCTTGGTACCGCGGCGAGGAATGGAGCTACCTC
CGTGGTGGCCTGACGACAGTGGACCGGGACTATGGATGGATCAACAACATCCACCATGAC
ATTGGCACCCATGTCATCCACCACCTCTTCCCCCAAATACCTCACTACCACCTAGTAGAA
GCAACCAAGGCAGCAAGGCCAGTACTGGGCAGATACTACCGGGAGCCGGAGAAGTCAGGC
CCGCTCCCAATGCACCTCATCACCGTCCTCCTCAAGAGCTTGAGAGTCGATCACTTTGTC
AGCGACGTGGGAGATGTTGTCTTCTACCAAACCGACCCGAGCCTGAGTGGCGACAACTGG
GCTGGAACCGACAAGCAGAAGTGATGAGAGACTGGAAACTGAAGTTACTACTGTTTAAGG
AAGAATGCCTGATAGAGATAGTAGAGACATCGATAGCCTGCTGAGAATAAGCAGAGGGTG
CTTCCAGCTGAAGTCAAAGCATGGAAGCTCCGCAGCCAACAAACAAGGACGCGTTGATTG
GTTCATCATGAGATTATTCATCGGATCATTTTATTAGAGCTAGCATTCTCCCATTGCGGT
TGTAACTAGCAGATGTTGTTTCAACTTTATTACAAATTTTGAATGGAATGTGGAACAGTG
TAACAGATTGATTAATTATTATCCAAAATCGATATTCTGGAAAAAAAAAAAAAGAAAAAA
AAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK357949	1626	0.0	31 - 1624	99	1592 / 1602	CUST_18797_PI390587928	ABC06725 ABC07662 ABC07663
AK374628	1361	0.0	32 - 1119	88	958 / 1088	None	ABC06725 ABC07662 ABC07663
MLOC_78457.1	693	0.0	1 - 619	99	618 / 619	CUST_39322_PI390587928	ABC06725 ABC07663
MLOC_34565.6	4086	0.0	3154 - 4083	88	822 / 930	CUST_6811_PI390587928 CUST_24228_PI390587928 CUST_18798_PI390587928	ABC06725 ABC07662 ABC07663 ABC11306 ABC16504
MLOC_27131.1	609	0.0	45 - 563	100	519 / 519	CUST_18797_PI390587928	ABC07663
MLOC_34566.1	1040	0.0	268 - 966	87	605 / 699	None	ABC07662 ABC07663
MLOC_32635.1	286	9e-146	1 - 281	100	281 / 281	None	ABC07663
AK362552	1594	6e-123	252 - 1223	75	746 / 990	None	ABC06725 ABC07663 ABC09168 ABC09169
MLOC_52158.1	1349	6e-123	377 - 1348	75	746 / 990	None	ABC06725 ABC07663 ABC09168 ABC09169
MLOC_21559.2	1647	4e-110	195 - 1142	75	723 / 966	CUST_18796_PI390587928	ABC06725 ABC07663
MLOC_48662.1	421	8e-82	145 - 421	87	240 / 277	None	ABC07663
AK366019	2017	4e-80	449 - 968	77	409 / 528	None	ABC06725 ABC07663
MLOC_21559.1	2624	4e-80	195 - 714	77	409 / 528	None	ABC06725 ABC07663
MLOC_34565.4	3078	8e-62	2839 - 2977	98	136 / 139	CUST_6811_PI390587928	ABC07662 ABC07663 ABC11306 ABC16504