barSeed - Barley Seed Development Database

Probe CUST_18797_PI390587928

Source Contig U35_15046

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18797_PI390587928	Hv_44K_v2	TATTAGAGCTAGCATTCTCCCATTGCGGTTGTAACTAGCAGATGTTGTTTCAACTTTATT	1471	GeneList: turquoise MasterList: Fatty_acid_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.728	1.591	1.639	0.679	0.140	0.092
Raw	9477.780	13858.013	12121.567	7881.987	582.057	418.456

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357949	1626	2e-24	1494 - 1553	100	60 / 60	plus	ABC06725 ABC07662 ABC07663
MLOC	MLOC_27131.1	609	2e-24	433 - 492	100	60 / 60	plus	ABC07663
JLOC1	JLOC1_18352.1	610	8e-25	438 - 497	100	60 / 60	plus
Harvest21	ABC07663	1626	3e-25	1472 - 1531	100	60 / 60	plus	ABC07663
Harvest35	U35_15046	1626	3e-25	1472 - 1531	100	60 / 60	plus

Contig Sequence (1626 bp)

>U35_15046 1626 Hv_44K_v2
CCCCGCCCGGCCACCCAAGCCAAAGCATCCTCTCCCGAATCTCTCTCTCCTCCCCTCTCA
TTGCCTCCTCCCCCCCCCCCCCCTCCCCCAGGACGCGCGCGGCACAGATCCGTCCGTCCG
TACGCGGCCATGGCCCCCGCAATGAGGCCGGAGCAGGAGGCGAGCTGCAAGGCCACCGAG
GACCACCGCCGCTCCGAGTTCGACGCCGCCAAGCCGCCGCCCTTCCGCATCGGCGACGTC
CGCGCCGCCGTGCCGCCCCACTGCTGGCGCAAGAGCCCCCTGCGCTCCCTCTCCTACGTC
GCCCGCGACGTCGCCGTCGTCGCGGCGCTCGCCGCCGCCGCGTGGCGGGCCGACACCTGG
GCCCTCTGGCCGCTCTACTGGGCCGTCCAGGGCACCATGTTCTGGGCGCTCTTCGTCCTC
GGCCACGACTGCGGTCACGGGAGCTTCTCGGACAGCGGCACGCTCAACAGCGTCGTCGGC
CACCTGCTACACACCTTCATCCTCGTCCCATACAACGGCTGGAGGATCAGCCACAGAACG
CACCATCAGAACCATGGCCACATCGAAAAGGACGAGTCATGGCACCCGATCACTGAGAAG
GTGTACCAGAAATTGGAACCACGGACAAAGACACTGCGCTTCTCAGTACCATTCCCGCTG
CTGGCTTTTCCTGTTTACCTCTGGTACAGAAGCCCGGGCAAGGAAGGCTCACACTTCAAC
CCGAGCAGCGATCTGTTTACCCCCAAGGAGAGGCGTGATGTGATCATCTCCACCACCTGC
TGGTTCACGATGATTGCGCTGCTCATCGGCATGGCGTGTGTCTTTGGCCTGGTACCGGTG
CTCAAGCTGTACGGGGTTCCATACATTGTGAATGTCATGTGGCTTGATTTGGTGACATAT
CTTCACCACCATGGTCACCAGGACCTCCCTTGGTACCGCGGCGAGGAATGGAGCTACCTC
CGTGGTGGCCTGACGACAGTGGACCGGGACTATGGATGGATCAACAACATCCACCATGAC
ATTGGCACCCATGTCATCCACCACCTCTTCCCCCAAATACCTCACTACCACCTAGTAGAA
GCAACCAAGGCAGCAAGGCCAGTACTGGGCAGATACTACCGGGAGCCGGAGAAGTCAGGC
CCGCTCCCAATGCACCTCATCACCGTCCTCCTCAAGAGCTTGAGAGTCGATCACTTTGTC
AGCGACGTGGGAGATGTTGTCTTCTACCAAACCGACCCGAGCCTGAGTGGCGACAACTGG
GCTGGAACCGACAAGCAGAAGTGATGAGAGACTGGAAACTGAAGTTACTACTGTTTAAGG
AAGAATGCCTGATAGAGATAGTAGAGACATCGATAGCCTGCTGAGAATAAGCAGAGGGTG
CTTCCAGCTGAAGTCAAAGCATGGAAGCTCCGCAGCCAACAAACAAGGACGCGTTGATTG
GTTCATCATGAGATTATTCATCGGATCATTTTATTAGAGCTAGCATTCTCCCATTGCGGT
TGTAACTAGCAGATGTTGTTTCAACTTTATTACAAATTTTGAATGGAATGTGGAACAGTG
TAACAGATTGATTAATTATTATCCAAAATCGATATTCTGGAAAAAAAAAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_15046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g01370.1	386	protein\|fatty acid desaturase, putative, expressed
Brachypodium v1_2	Bradi4g45037.1	388
Arabidopsis v10	AT5G05580.1	435	\| Symbols: FAD8 \| fatty acid desaturase 8 \| chr5:1664331-1666345 FORWARD LENGTH=435