barSeed - Barley Seed Development Database

Probe ABC06725

Source Contig ABC06725

barSeed

Links

Affymetrix Source Sequence (1683 bp)

>ABC06725 1683
CCCGGGCTTCCACCCGCCCGGACGCACAAGATCCTGGGCGACCGGCGCGGCCGTGGTGGT
ACACGACTGGGCTAGCTAGCCATCGCTGCCGTTGCCCAATGGCCCGGCTCGCCCTCTCCG
ACTGCCGCGGCCTCACGCCGCTCCGCGCGCGCAGCGCCATTGCGCTGCCGTCGCCTCCCC
ACCTCGCCGCGGGGCCGCGTCGCCCCGCGCCTGCCGCCATCCATCGCGATTGGGCGCTCC
GCGTCTCCGCGCCAACCCGCCTCGCGTCCGTCCTCGAGGAGGATAAAAGGGGCCTCGGGG
GAGCGGAGGAGGCCGGGAGCTCTTCGGCCGGGTTCAACCCGGGGGCGCCGCCGCCGTTCG
GCCTGGCGGAGATCCGCGCGGCCATCCCGAAGCACTGCTGGGTCAAGGACCCGTGGCGGT
CCATGAGCTACGTGCTGCGCGACGTCCTGGTCGTGCTCGGCCTCGCCGCCGCCGCCGCGC
GGGCCGACAGCTGGCTCGTCTGGCCGCTCTACTGGGCCGCGCAGGGCACCATGTTCTGGG
CGCTCTTCGTCCTGGGACACGACTGTGGGCATGGGAGCTTCTCGAGCAACCCAAAGCTAA
ACAGCGTGGTCGGCCACATACTCCATTCCTCCATCCTCGTTCCATACAACGGCTGGAGGA
TTAGCCACAGGACGCACCACCAGAACCACGGCCATGTGGAGAAAGACGAATCCTGGCACC
CGCTACCCCAGAGGCTGTACAATAGCCTGGACAGTATGACAAAGAAGTTGCGGTTCAGCA
TGCCATTTCCCATGCTTGCATTCCCCTTATACTTGTTTGCGAGGAGTCCTGGCAAGGAAG
GCTCACACTTCAACCCAAACAGCGATTTATTCCAACCTAATGAGAAAAAGGATGTGCTAA
CATCCACTGCATCCTGGCTGGCAATGATTGGGGTTCTCGCAGGTCTGACCTTTGTGATGG
GGCCTCTTAAGATGCTAAAGCTCTATGCAATCCCATATGTGATATTTGTTATGTGGCTGG
ATTTTGTCACATACTTGCATCATCATGGTCACGAAGACAAGGTCCCCTGGTATCGTGGAA
AGGAATGGAGCTATCTGCGTGGAGGATTGACAACACTTGATCGGGACTACGGGTTGATCA
ACAAGATACACCATGACATTGGCACTCATGTCATTCATCATCTTTTCCCACAAATCCCGC
ATTATCATCTTGTCGAGGCGACTGAGGCAGCAAAACCAGTGCTTGGCAAGTACTACAAAG
AACCAGAGAAGTCGGCTCCTCTCCCATTCCACCTACTCCAGGTGCTATCGCGGAGTTTGA
AGAAGGATCACTATGTTAGCGACACCGGAGACATAGTTTACTACCAAAGTGAGTCAGAAA
CGAGTACATCTGGACAGAGGTCTGATTAAGATGAAACATTAGCATATATAGGTCATCCTT
AAACTCCTCAGGAGGTTGTGGCTTAAGTAAAGAGTTAAACACCCTTACTAGGCTCCTGGG
ATCTCGGATTGGCGAGTCCATGAATGTACATCATGAAGCACGAATGTAGTAACTAGTGAA
TTATTACCATTGTAAAAGAGCAATTGCTGCTCGCTTCTGCTCGCTTCAACGCTTGCCTTG
ATCTGCTGGTATAGCCCCCTTGGAGTACATCTTATATATATATATATTTTTTTTTTTTTC
TCT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_21559.2	1647	0.0	1 - 1532	99	1527 / 1532	CUST_18796_PI390587928	ABC06725 ABC07663
AK366019	2017	0.0	1416 - 2017	99	601 / 602	None	ABC06725 ABC07663
MLOC_21559.1	2624	2e-67	1789 - 1928	100	140 / 140	None	ABC06725 ABC07663
AK362552	1594	0.0	265 - 1310	82	862 / 1051	None	ABC06725 ABC07663 ABC09168 ABC09169
MLOC_52158.1	1349	0.0	290 - 1335	82	862 / 1051	None	ABC06725 ABC07663 ABC09168 ABC09169
AK357949	1626	4e-110	235 - 1179	75	724 / 967	CUST_18797_PI390587928	ABC06725 ABC07662 ABC07663
AK374628	1361	1e-100	186 - 990	75	613 / 815	None	ABC06725 ABC07662 ABC07663
MLOC_34565.6	4086	4e-100	3283 - 4086	75	612 / 814	CUST_6811_PI390587928 CUST_24228_PI390587928 CUST_18798_PI390587928	ABC06725 ABC07662 ABC07663 ABC11306 ABC16504
MLOC_78457.1	693	1e-69	1 - 405	79	322 / 409	CUST_39322_PI390587928	ABC06725 ABC07663
MLOC_43384.1	332	7e-53	7 - 120	100	114 / 114	None	ABC06725