barSeed - Barley Seed Development Database

Probe CUST_18798_PI390587928

Source Contig U35_15045

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18798_PI390587928	Hv_44K_v2	GGATTAAGTGCTCTGCACCGCTTTTCTGATCTGTTATATGCTTGCTAATTAGAGAGTAAA	1488	GeneList: lightsteelblue1 MasterList: Fatty_acid_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.214	4.856	1.462	0.409	0.180	0.160
Raw	426.803	300.841	77.146	36.620	3.464	3.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34565.6	4086	2e-23	2799 - 2856	100	58 / 58	minus	ABC06725 ABC07662 ABC07663 ABC11306 ABC16504
JLOC1	JLOC1_22304.2	1651	1e-23	1572 - 1629	100	58 / 58	plus
JLOC1	JLOC1_22304.1	1310	1e-23	1231 - 1288	100	58 / 58	plus
Harvest21	ABC07662	609	3e-25	15 - 74	100	60 / 60	minus	ABC07662
Harvest35	U35_15045	1562	3e-25	1489 - 1548	100	60 / 60	plus

Contig Sequence (1562 bp)

>U35_15045 1562 Hv_44K_v2
GCCCCAAATCTCTCTCCCCGCTTTCCGGGAGACAGATCCAGCCATGGGCGCCGCGGCGAG
GAGGGCGCCCGAGCAGGAGCAAAGCTGCAAGGCCACCGAGGACTTCGACGCCGCCAAGCC
TCCGCCGTTCCGCATCGGCGACGTGCGTGCCGCCGTGCCCGCCCACTGCTGGCGCAAGAG
CCCACTCCGGTCCCTCTCCTACGTCGCCCGCGACGTCGCCGTTGTGGCCGCGCTGGCCGT
GGTCGCATGGTGGCTCAACAGCTGGGCCGTGTGGCCGCTCTACTGGGCAGCGCAGGGCAC
CATGTTCTGGGCGCTCTTCGTCCTCGGCCACGACTGTGGTCACGGGAGCTTCTCGGACAG
CTTGACGCTCAACAGCGTCGTCGGCCACCTGCTGCACACCTTCATCCTTGTCCCATACAA
CGGATGGAGGATCAGCCACAGGACGCACCATCAGAACCATGGCCACATCGACAAGGACGA
GTCATGGCACCCGATTACCGAGAATGTGTACAAGGAGATGGAACCAAGCACCAAGAAGCT
ACGCTTCTCATTGCCATATCCACTCCTGGCTTTCCCTGTCTACCTTTGGTACAGAAGCCC
GGGCAAGAACGGCTCGCATTTCAACCCAAGCAGCGATTTGTTCAGCCCCAAGGAGAGGCG
TGACGTGATTGTCTCCACCACTTGCTGGTTCACGATGATCGCGCTGCTCATCGCCATGGC
GTGTGTGTTCGGACCGGTGCCAGTGCTCAAGCTCTACGGGGTTCCATATGCTGTGTTTGT
GATGTGGCTCGATTTGGTAACGTACCTTCACCACCATGGTCACCAGGACCTCCCTTGGTA
TCGCGGCGAGGAATGGAGCTACCTCCGTGGTGGCCTGACGACTGTGGACCGGGACTATGG
ATGGATCAACAACATCCACCATGACATTGGCACTCATGTCATCCACCACCTCTTCCCTCA
AATACCTCACTACCACCTAGTAGAAGCGACCAAGGCAGCAAGGCCAGTGCTGGGAAGATA
TTACCGCGAGCCAGAGAAGTCGGGTCCACTGCCACTTCACCTCTTCCATGTCCTCCTCAG
GAGCTTGAGAGCCGATCACTTCGTAAGTGATGTTGGAGATGTTGTCTTCTACCAAACGGA
CCCAAGCTTGAATGGTGATAACTGGACGAAAAATGGCAAGCACAAGTGATGTAAGATAGA
GAGATATCATAGCCTGCTGGAAAATTAAGCAGAAAGGGCTTCCTGCTAAAATCAAAGCAT
GTGGCTCTGCAACAACAGACAGGATGTGTTGATTGGTTGATGAGATTCAGATCGTTCATT
AGAATTAGCATTCTCCAATTGCGGTTGTAGCTAGCAATGTTATTTTCAATCTCTTGCCAG
TTTTGGATGTGGAGTTATGTAACGAATTAATGAAGCTTCGTAGACTATTGATCAGTCTGG
AGTTTGTATGTGCCGGGCCTGGGAGAGCGGGCATTAATTTTGTGAGCCGGATTAAGTGCT
CTGCACCGCTTTTCTGATCTGTTATATGCTTGCTAATTAGAGAGTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_15045 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g01370.1	386	protein\|fatty acid desaturase, putative, expressed
Brachypodium v1_2	Bradi4g45037.1	388
Arabidopsis v10	AT5G05580.1	435	\| Symbols: FAD8 \| fatty acid desaturase 8 \| chr5:1664331-1666345 FORWARD LENGTH=435