barSeed - Barley Seed Development Database

Probe ABC04823

Source Contig ABC04823

barSeed

Links

Affymetrix Source Sequence (907 bp)

>ABC04823 907
AACAAGAACGAGGCATTGAATGGAGGTGGCATCCTGTTCGTGGACAAGCACCCTGACCTG
AGGGTGAGGGTGGTGCACGGCAACACCCTCACGGCCGCCGTGATCCTGAACGAGATCCCC
AGCAACACCAAGGAGGTGTTCCTCACCGGCGCCACGTCCAAGCTCGGCAGAGCCATCGCC
CTCTACCTCTGCCGGAAAAGGATCAGAGTCATCATGCTGACGATGTCGTCGGAGAGGTTC
CTGAAGATCCAGAGGGAGGCGCCGGCGGAGTTCCAGCAGTACCTCGTGCAGGTCACCAAG
TACCAGGCCGCGCAGAACTGCAAGACGTGGCTCGTGGGCAAGTGGCTGTCGCCGAGGGAG
CAGCGGTGGGCGCCGCCGGGGACGCACTTCCACCAGTTCGTCGTGCCGCCGATCATTGGG
TTCCGCCGCGACTGCACCTACGGCAAGCTCGCCGCCATGAGGCTCCCCAAGGACGTGCAG
GGCCTCGGCTCCTGCGAGTACACGATGGAGCGAGGGGTGGTGCACGCGTGCCACGCCGGC
GGAGTGGTGCATTTCCTGGAGGGTTGGCAGCACCACGAGGTGGGCGCGCTCGACGTCGAC
CGGATCGACGTCGTGTGGAAGGCGGCGCTCAAGCACGGCCTGACGCCGGTGTGATAGCTC
CCTGGACGACGCAGGTGCGGAATGCAGCCGAAACGAAGCAACTAGGATCGCTCCCTCCTC
CATCCCCCATGTATTGTATTGTACTCCACTCCATTCATGTCAAATGTACCACTAATACCG
GTTTGACAAGAGACTGGATTAATTGAACCACCCAAGGACAGCAGCACACCTGTTCTTGAC
TCGTCTTTTATGACCAAAGCCCTCCAAAAGGGATAGCAGTAGAGTTCATCAAAAAAAAAA
AAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK353820	2303	0.0	1334 - 2224	100	891 / 891	CUST_34716_PI390587928 CUST_38442_PI390587928 CUST_38443_PI390587928	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753
MLOC_64491.1	3866	0.0	1642 - 2532	100	891 / 891	CUST_31727_PI390587928 CUST_38442_PI390587928 CUST_38443_PI390587928 CUST_34716_PI390587928	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
MLOC_64491.2	3580	0.0	1356 - 2246	100	891 / 891	CUST_34716_PI390587928 CUST_38442_PI390587928 CUST_38443_PI390587928	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
AK249770.1	2323	0.0	1451 - 2308	100	858 / 858	CUST_34716_PI390587928 CUST_25122_PI390587928 CUST_38442_PI390587928 CUST_38443_PI390587928	ABC04823 ABC26033 ABC37753
AK372913	2156	7e-170	1206 - 1529	100	324 / 324	CUST_25122_PI390587928 CUST_34716_PI390587928 CUST_38443_PI390587928 CUST_38442_PI390587928	ABC04823 ABC26033 ABC37753
MLOC_63893.2	2291	0.0	1330 - 1984	89	585 / 655	CUST_3078_PI390587928	ABC04823 ABC26033
MLOC_63893.3	1911	0.0	1002 - 1656	89	585 / 655	CUST_3078_PI390587928	ABC04823 ABC26033
MLOC_63893.1	2616	0.0	363 - 1017	89	585 / 655	CUST_3078_PI390587928	ABC04823 ABC26033
MLOC_63893.4	2431	0.0	246 - 901	89	585 / 656	CUST_3078_PI390587928	ABC04823 ABC26033
MLOC_63893.5	2446	0.0	246 - 902	89	585 / 657	CUST_3078_PI390587928	ABC04823 ABC26033
MLOC_64492.1	1666	1e-87	16 - 194	99	179 / 180	CUST_34716_PI390587928 CUST_38443_PI390587928 CUST_38442_PI390587928	ABC04820 ABC04823 ABC04824 ABC37753 ABC47351
MLOC_70751.2	2337	0.0	182 - 820	86	549 / 640	CUST_30311_PI390587928	ABC04823 ABC26033
MLOC_70751.3	2215	0.0	174 - 814	86	549 / 642	CUST_30311_PI390587928	ABC04823 ABC26033
MLOC_70751.4	1961	0.0	174 - 814	86	549 / 642	CUST_30311_PI390587928	ABC04823 ABC26033
MLOC_70751.1	2360	7e-140	182 - 607	88	375 / 427	CUST_30311_PI390587928	ABC04823 ABC26033
MLOC_63893.10	1915	6e-106	62 - 372	89	277 / 311	CUST_3078_PI390587928	ABC04823
MLOC_63893.8	1786	8e-65	1 - 183	91	167 / 183	CUST_3078_PI390587928	ABC04823
MLOC_63893.7	1202	8e-65	1 - 183	91	167 / 183	None	ABC04823
MLOC_63893.9	2075	6e-106	232 - 542	89	277 / 311	CUST_3078_PI390587928	ABC04823
MLOC_63893.6	2284	6e-91	1 - 245	91	224 / 245	CUST_3078_PI390587928	ABC04823
AK371657	861	7e-80	700 - 861	100	162 / 162	CUST_34716_PI390587928	ABC04823
AK360703	991	2e-76	836 - 991	100	156 / 156	CUST_38443_PI390587928 CUST_38442_PI390587928	ABC04820 ABC04823 ABC04824 ABC47351