barSeed - Barley Seed Development Database

Probe ABC04820

Source Contig ABC04820

barSeed

Links

Affymetrix Source Sequence (1639 bp)

>ABC04820 1639
GCCGTCGCGCTCGCTCCGTGTCGTCGTCATCGGCGCCGGGGCCGCCGGTCTGGTGGCGGC
GCGCGAGCTGCGACGCGAAGGCCACGCCCCCGTCGTGTTCGAGCGCACGGACGGCGTGGG
CGGCACCTGGGTCTACGAAGCCGACGCCGACGCGTCCGCCTCGCCGGAGCCGCCCGGTGG
CCCCCGGCGGCGCTCGAACCTCTACGCGTCCCTCCGCACCAACCTCCCGCGCGAGTCCAT
GGGCTTCCTCGACTTCCCCTTCGTGGCCGGCGCCGACTGCGACATCCGCAGGTTCCCCGG
CCACGCGGAGGTGCTCCGGTACCTCCAGAGCTTCGCGCGGCGGTTCGACCTCCACGGCCT
CGTCCGGCTGGAGACGGAGGTGGTCCGGGTGAGCAGGGAGGCGAGCGGGGCCAGCTGGCG
CGTCAGGTACACGAGGAAGGCGTCCGGCGGCGAGAAGCGCGAAGCGGAGGAGGAGGTGTT
CGACGCCGTCGTCGTCTGCAACGGCCACTACTCCCAGCCGCACTTCGCCGACGTCGCCGT
TTGCTCTGCTGCCGCAGGCGTGGATGCTTGGCCCGGGAAGCAGCTGCACAGCACCAGCTA
CCGCGTGCCGGAGCCATTCCACGGCCAGGTTGTCGTGGTGATAGGGTGTGGACCGAGTGG
CACGGACATCTCGAGGGACATCGCTGGCGTCGCCAAAGAGGTCCATCTCGCCAGTAGATC
GGCGTTTGCTGCTACCAGCGACAAGCTGCCTGGACATGCTAATATGTGGCTTCATTCCGA
GATCGAGTGTGTTCAGGAAGACGGGAGTGTGGTCTTCCACGACGGCAGCCGCGTCAAAGC
GGATGTCATCATGCATTGCACCGGATACAAGTACAACATCCCATTCCTCAACAGTGATGC
AACCGTCTCCGTGGACGGCAATTGTGTCGAGCCACTGTACAAGCATGTGTTCCCTCCAAA
GGCTGCTCCTCAACTCTCCTTCATCGGTTTGCCTTTAAAGGTGATCCCTTTTCCACTATT
CGAGCTCCAGAGCCACTGGGTGGCCGGCATTCTGTCAGGGCGATTCCAGCTCCCGTCCGA
GGAGGAGATGATGCGAGACGTGACGGCCTTCTACTCACGTTTGGGCGCTCGCGGATGGCC
CCGAAGATACACCCACAGACTGCGAGATCGCGAGTTCGAGAACGAGGACTGGCTCGCGGA
GCAATGCCGGCGGGACGGGCCCGAGGAGTGGAGGAGGGAGATGTTCGCCGCGGCAATAGA
GGTCATGGGAGAACGTCCGGAGACCTACCGGGACGAGTGGGATGGTGGTGACTACGACCA
TTTACTGGCCCAAGCAAACCGAGATTTCGCGGCGCATCTTCCCGCCCCTCTTTGGCCTTG
ATTGATCGTCGTTCCTTCTTGGTCGAAGTGTCGACGAGAGAGACAGTGGAACGGAGGTTG
AGGAACCCAGAACGCGAATAGGATTACATAGCGATCAGTAAACACGAAGATGATAAACTG
ATGAACTCTACTGCTATCCCTTTTGGAGGGCTTTGGTCATAAAAGACGAGTCAAGAACAG
GTGTGCTGCTGTCCTTGGGTGGTTCAATTAATCCAGTCTCTTGTCAAACCGGTATTAGTG
GTACATTTACATGAATGGA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355167	1637	0.0	98 - 1637	99	1539 / 1558	CUST_34415_PI390587928	ABC04820 ABC04824 ABC47351
AK360703	991	0.0	1 - 977	99	976 / 977	CUST_38443_PI390587928 CUST_38442_PI390587928	ABC04820 ABC04823 ABC04824 ABC47351
MLOC_7675.2	1151	0.0	1 - 842	98	841 / 860	CUST_34415_PI390587928	ABC04820
MLOC_64492.1	1666	0.0	552 - 1193	99	641 / 642	CUST_38443_PI390587928 CUST_34716_PI390587928 CUST_38442_PI390587928	ABC04820 ABC04823 ABC04824 ABC37753 ABC47351
MLOC_7675.1	1279	1e-119	1 - 234	100	234 / 234	None	ABC04820
MLOC_64492.2	771	0.0	1 - 514	100	514 / 514	None	ABC04820 ABC04824
MLOC_64491.1	3866	2e-87	2956 - 3131	100	176 / 176	CUST_34716_PI390587928 CUST_38443_PI390587928 CUST_38442_PI390587928 CUST_31727_PI390587928	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
MLOC_64491.2	3580	2e-87	2670 - 2845	100	176 / 176	CUST_38443_PI390587928 CUST_34716_PI390587928 CUST_38442_PI390587928	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
AK353820	2303	5e-109	2083 - 2301	99	218 / 219	CUST_38443_PI390587928 CUST_34716_PI390587928 CUST_38442_PI390587928	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753
MLOC_10289.2	2817	6e-68	1257 - 1397	100	141 / 141	None	ABC04820
MLOC_10289.3	2966	8e-67	1408 - 1546	100	139 / 139	None	ABC04820
MLOC_10289.1	2809	3e-66	1258 - 1395	100	138 / 138	None	ABC04820