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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34716_PI390587928Hv_44K_v2ATTGTATTGTACTCCACTCCATTCATGTCAAATGTACCACTAATACCGGTTGACAAAGAG2046GeneList: greenyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 7.7436.0371.5290.6420.3370.325
Raw 158.296212.07541.91531.3193.4374.119



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249770.123233e-212183 - 22439759 / 61plus ABC04823 ABC26033 ABC37753
MLOCAK35382023033e-212066 - 21269759 / 61plus ABC04820 ABC04823 ABC04824 ABC26033 ABC37753
MLOCAK3716578613e-21789 - 8499759 / 61plus ABC04823
MLOCAK37291321563e-212037 - 20979759 / 61plus ABC04823 ABC26033 ABC37753
MLOCMLOC_64492.116663e-21535 - 5959759 / 61plus ABC04820 ABC04823 ABC04824 ABC37753 ABC47351
MLOCMLOC_64491.138663e-212374 - 24349759 / 61plus ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
MLOCMLOC_64491.235803e-212088 - 21489759 / 61plus ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
JLOC1JLOC1_42355.126192e-211074 - 11349759 / 61minus
JLOC1JLOC1_42354.136742e-212183 - 22439759 / 61plus
Harvest21ABC428892076e-2232 - 929759 / 61minus
Harvest21ABC048239076e-22115 - 1759759 / 61minusABC04823
Harvest35U35_1883621063e-252047 - 210610060 / 60plus



Contig Sequence (2106 bp)

>U35_18836 2106 Hv_44K_v2
GCAAATCAAATCACACTCGTGCCAGAAGACGAGAGCCCCCCGTCCCCTTCCTCCTCCACC
GAGCTCCAGCTCCCGCTCCGGAGGACACGGGCCATGGCGCCCCCTCTCTCCTCCTGGCCA
TGGGCGAGCCTGGGCATATACAAGTACTTCCTGCTGGCCCCGCTGGTGTGGAAGGTGGCG
CAGGAGTGGACGGAGCAGGGCGGCGCGCCGCTGGGCTCGCGGTGGCTGCACCTGCTGCTG
CTCTTCTCCGCCCGCGGGCTCACGTACCAGTTCTGGTTCTCCTACAGCAACATGCTCTTC
CTCACCCGCCGCCGCCGCGTCGTCCCCGACGGCGTCGACTTCCGCCAGGTCGACCACGAG
TGGGACTGGGATAACTTCCTGGTGTTGCAAACGCTGATTGGTGCAGCGCTAGTCAACGGC
CCGCTGCTCCTCCCGGGGCTGGAGAATCTCCGCGTGTGGGACCCGCGGGGGCTGGGCATC
GCGCTGCTGCTGCATGTGGGCTTCTCAGAGCCCGTGTTCTACTGGGCCCACCGGGCCCTG
CACGGGGCCCCGCTCTTCTTCAGCCAGTACCACGCCGGCCACCACTCCACGCCGGTGACC
CAGCCACTGACAGCTGGATTCGGCACGCCGTTGGAGGCCCTGCTGCTGACGCTGACGATG
GGGGTCCCGTTGGCAGGGGCCTTCCTGATGGGGGCTGGGTCCGTGGGCCTGGTCTACGTG
CACCTCCTCACGTTCGACTATCTTCGGAGCATGGGGTACAGCAATGTGGAGGTCATCTCT
CACAGGGTCTTCGAGGCTGTCCCACCGCTCAGATACCTCCTCTACACCCCGACGTATCTG
AGCCTGCACCACAGGGAGAAGGACTCCAACTTCTGCCTCTTCATGCCTCTCTTCGACCTC
CTGGGCGGTACCCTAAACTCCAAGTCATGGGAGCTGCAGAAGGAGATCTACCAAGGGAAG
AATGATGGGGTGCCGGAGTTCGTGTTCCTGGCGCACGTGGTGGACATCATGTCGTCGATG
CACGTCCCGTTCGTGCTCCGCTCCATCTCCTCGGTGCCGTTCGAGAACCGGCTGATCCTG
CTGCCCTTCTGGCCCGTGGCCTTGGTCTACATGCTGCTCATGTGGTGCTGCTCCAAGACC
TTCCTCGTCAGCTTCTACTACCTCCGCGGCCGCCTCCACCAGACGTGGAGCGTGCCCCGC
CACGGCTTCCAGTACTTCATCCCGGCGGCCAAGGAGGGCATCAACCGCCAGATCGAGCTC
GCCATCCTCCGCGCCGACAGGATGGGCGTCAAGGTCCTCAGCCTCGCCGCCCTCAACAAG
AACGAGGCATTGAATGGAGGTGGCATCCTGTTCGTGGACAAGCACCCTGACCTGAGGGTG
AGGGTGGTGCACGGCAACACCCTCACGGCCGCCGTGATCCTGAACGAGATCCCCAGCAAC
ACCAAGGAGGTGTTCCTCACCGGCGCCACGTCCAAGCTCGGCAGAGCCATCGCCCTCTAC
CTCTGCCGGAAAAGGATCAGAGTCATCATGCTGACGATGTCGTCGGAGAGGTTCCTGAAG
ATCCAGAGGGAGGCGCCGGCGGAGTTCCAGCAGTACCTCGTGCAGGTCACCAAGTACCAG
GCCGCGCAGAACTGCAAGACGTGGCTCGTGGGCAAGTGGCTGTCGCCGAGGGAGCAGCGG
TGGGCGCCGCCGGGGACGCACTTCCACCAGTTCGTCGTGCCGCCGATCATTGGGTTCCGC
CGCGACTGCACCTACGGCAAGCTCGCCGCCATGAGGCTCCCCAAGGACGTGCAGGGCCTC
GGCTCCTGCGAGTACACGATGGAGCGAGGGGTGGTGCACGCGTGCCACGCCGGCGGAGTG
GTGCATTTCCTGGAGGGTTGGCAGCACCACGAGGTGGGCGCGCTCGACGTCGACCGGATC
GACGTCGTGTGGAAGGCGGCGCTCAAGCACGGCCTGACGCCGGTGTGATAGCTCCCTGGA
CGACGCAGGTGCGGAATGCAGCCGAAACGAAGCAACTAGGATCGCTCCCTCCTCCATCCC
CCATGTATTGTATTGTACTCCACTCCATTCATGTCAAATGTACCACTAATACCGGTTGAC
AAAGAG



Homology of Contig U35_18836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g08230.16290.0protein|WAX2, putative, expressed
Brachypodium v1_2Bradi3g05880.16270.0
Arabidopsis v10AT5G57800.16320.0| Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632