barSeed - Barley Seed Development Database

Probe CUST_38442_PI390587928

Source Contig U35_3178

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38442_PI390587928	Hv_44K_v2	TGCTGTCCTTGGGTGGTTCAATTAATCCAGTCTCTTGTCAAACCGGTATTAGTGGTACAT	1662	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.087	3.379	1.213	0.681	0.258	0.404
Raw	611.010	826.874	251.361	234.525	30.329	50.662

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249770.1	2323	2e-24	2214 - 2273	100	60 / 60	minus	ABC04823 ABC26033 ABC37753
MLOC	AK353820	2303	2e-24	2097 - 2156	100	60 / 60	minus	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753
MLOC	AK360703	991	2e-24	904 - 963	100	60 / 60	plus	ABC04820 ABC04823 ABC04824 ABC47351
MLOC	AK372913	2156	2e-24	2068 - 2127	100	60 / 60	minus	ABC04823 ABC26033 ABC37753
MLOC	MLOC_64492.1	1666	2e-24	566 - 625	100	60 / 60	minus	ABC04820 ABC04823 ABC04824 ABC37753 ABC47351
MLOC	MLOC_64491.1	3866	2e-24	2405 - 2464	100	60 / 60	minus	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
MLOC	MLOC_64491.2	3580	2e-24	2119 - 2178	100	60 / 60	minus	ABC04820 ABC04823 ABC04824 ABC26033 ABC37753 ABC47351
JLOC1	JLOC1_42355.1	2619	8e-25	1044 - 1103	100	60 / 60	plus
JLOC1	JLOC1_42354.1	3674	8e-25	2214 - 2273	100	60 / 60	minus
Harvest21	ABC04823	907	3e-25	85 - 144	100	60 / 60	plus	ABC04823
Harvest21	ABC04820	1639	3e-25	1567 - 1626	100	60 / 60	plus	ABC04820
Harvest21	ABC42889	207	6e-22	2 - 61	97	58 / 60	plus
Harvest35	U35_3178	1722	3e-25	1663 - 1722	100	60 / 60	plus

Contig Sequence (1722 bp)

>U35_3178 1722 Hv_44K_v2
ATAGAAGCTGCATACGGAACGCGCAGGTAAAAAACCGCGTCCCCCCGCGACGCCGCTTCC
TCTTGTCCTCCTGCCTGATTGGTCCGATACTCCGATGCCGTCGCGCTCGCTCCGTGTCGC
CGTCATCGGCGCCGGGGCCGCCGGTCTGGTGGCGGCGCGCGAGCTGCGACGCGAAGGCCA
CGCCCCCGTCGTGTTCGAGCGCACGGACGGCGTGGGCGGCACCTGGGTCTACGAAGCCGA
CGCCGACGCGTCCGCCTCGCCGGAGCCGCCCGGTGGCCCCCGGCGGCGCTCGAACCTCTA
CGCGTCCCTCCGCACCAACCTCCCGCGCGAGTCCATGGGCTTCCTCGACTTCCCCTTCGT
GGCCGGCGCCGACTGCGACATCCGCAGGTTCCCCGGCCACGCGGAGGTGCTCCGGTACCT
CCAGAGCTTCGCGCGGCGGTTCGACCTCCACGGCCTCGTCCGGCTGGAGACGGAGGTGGT
CCGGGTGAGCAGGGAGGCGAGCGGGGCCAGCTGGCGCGTCAGGTACACGAGGAAGGCGTC
CGGCGGCGAGAAGCGCGAAGCGGAGGAGGAGGTGTTCGACGCCGTCGTCGTCTGCAACGG
CCACTACTCCCAGCCGCACTTCGCCGACGTCGCCGTTTGCTCTGCTGCCGCAGGCGTGGA
TGCTTGGCCCGGGAAGCAGCTGCACAGCACCAGCTACCGCGTGCCGGAGCCATTCCACGG
CCAGGTTGTCGTGGTGATAGGGTGTGGACCGAGTGGCACGGACATCTCGAGGGACATCGC
TGGCGTCGCCAAAGAGGTCCATCTCGCCAGTAGATCGGCGTTTGCTGCTACCAGCGACAA
GCTGCCTGGACATGCTAATATGTGGCTTCATTCCGAGATCGAGTGTGTTCAGGAAGACGG
GAGTGTGGTCTTCCACGACGGCAGCCGCGTCAAAGCGGATGTCATCATGCATTGCACCGG
ATACAAGTACAACATCCCATTCCTCAACAGTGATGCAACCGTCTCCGTGGACGGCAATTG
TGTCGAGCCACTGTACAAGCATGTGTTCCCTCCAAAGGCTGCTCCTCAACTCTCCTTCAT
CGGTTTGCCTTTAAAGGTGATCCCTTTTCCACTATTCGAGCTCCAGAGCCACTGGGTGGC
CGGCATTCTGTCAGGGCGATTCCAGCTCCCGTCCGAGGAGGAGATGATGCGAGACGTGAC
GGCCTTCTACTCACGTTTGGGCGCTCGCGGATGGCCCCGAAGATACACCCACAGACTGCG
AGATCGCGAGTTCGAGAACGAGGACTGGCTCGCGGAGCAATGCCGGCGGGACGGGCCCGA
GGAGTGGAGGAGGGAGATGTTCGCCGCGGCAATAGAGGTCATGGGAGAACGTCCGGAGAC
CTACCGGGACGAGTGGGATGGTGGTGACTACGACCATTTACTGGCCCAAGCAAACCGAGA
TTTCGCGGCGCATCTTCCCGCCCCTCTTTGGCCTTGATTGATCGTCGTTCCTTCTTGGTC
GAAGTGTCGACGAGAGAGACAGTGGAACGGAGGTTGAGGAACCCAGAACGCGAATAGGAT
TACATAGCGATCAGTAAACACGAAGATGATAAACTGATGAACTCTACTGCTATCCCTTTT
GGAGGGCTTTGGTCATAAAAGACGAGTCAAGAACAGGTGTGCTGCTGTCCTTGGGTGGTT
CAATTAATCCAGTCTCTTGTCAAACCGGTATTAGTGGTACAT

Homology of Contig U35_3178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40570.1	483	2e-173	protein\|flavin-containing monooxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi3g05860.1	457	0.0
Arabidopsis v10	AT1G62600.1	452	1e-142	Flavin-binding monooxygenase family protein \| chr1:23179542-23181411 FORWARD LENGTH=452