barSeed - Barley Seed Development Database

Probe ABC01737

Source Contig ABC01737

barSeed

Links

Affymetrix Source Sequence (3097 bp)

>ABC01737 3097
GCCGCCCTACCACCACCACTGCCCTCCTTGTGCCAAGTGAATAAGCTAGGGGACAGGCAC
CCACCGGTTGTGTTCCTCGTGCTCTGCTCTGCCCTGCCTCCGCTGCAGAACCAGAGAGCA
GAGGAGAGGAGAGATGCTGCTGCACGGGCTGGTGGACCGGCTAACGGGGAAGAACAAGGA
GGCGTGGAAGGAGGGCAAGATCCGGGGCACGGCGGTGCTGGTCAAGAGCGACGTGCTCGA
CCTCGGCGACTTCCACGCCTCCCTCCTCGACGGCGTCCACAAGATCCTCGGCAAGGACGA
CGGCGTCTCCTTCCGCCTCGTCAGCGCCACCGCCCCTGACCCACAGAATGGGAGCCGGGG
CAAGGTGGGGAAGCCGGCGCACCTGGAGGAGATGGTGGTGACGATGAAGTCGACGGCGGC
GGGGGAGTCGGTGTTCAAGGTCACCTTCGAGTGGGACGAGTCGCAGGGCGTCCCCGGCGC
CGTCATCGTCCGCAACACCTACCGCTCCGAGTACCTGCTCAAGACGCTCACCCTCCACGG
CGTCCCCGGCAAGGGCACCGTCGTCTTCGTCGCCAACTCCTGGATCTACCCCAACGTCGA
CCGCCTCTTCTTCGCCAACGACACCTATCTGCCCAGCAAAATGCCTGCACTTTTGGTGCA
ATACCGGCAAGATGAACTCAACAATCTCCGAGGCGACGACACGACCGGAGAGTACAAGGA
GGCTGACCGCGTGTACCGCTATGACTACTACAATGACCTCGGTGAGCCAGACAACGACAA
TCCCCGCCCAGTTCTCGGCGGCACCCAAGAACTCCCCTATCCCCGTCGTTGCAGAACTGG
CCGACCACCAACAGAAACGGACCCTAGATCGGAGAGCAGAATTCCTAAGTACAAGATTAA
GGAGGCCCTGAACATCTATGTCCCCCGCGATGAGCGCTTTGGGCACCTCAAGTTGTCTGA
CTTCCTTGGGTACTCTCTCAAGGCCATCACGGAGGCCATTCTTCCGATAATCAGGACCTA
TGTTGACAGTACACCCAAGGAGTTTGATTCGTTTCAAGACATCTATAATCTCTATGATGG
TCTTCTGAAAGTGCCAGATAACCAACACCTAAAGGAGCTCAAGAATAAAATCCCCCTTCA
GTTTATTAAAAGTCTTTTACCAGTTGCTGGCGATGACCTCCTAAACTTGCCCCTTCCACA
TGTTATCAAATCAGATAAGTATGCTTGGAGGTCAGATGAGGAGTTTGCACGGGAGATGCT
CGCAGCCGTGAACCCGGTTTGCATCAGACGTCTGACGAAGTTCCCTGTAAAAAAGTACCT
GGATCCCAGTGTGTACGGGGACCAGTCAAGCACTATCACTGAGGATCAAATTCAGCTGAA
CCTGGAAGATGGCCTCACAGTGAGACAGGCAATGGACAAGAAGAGGCTCTTCATTCTAGA
TCACCACGATAACTTCATGCCATTCCTTGACCGCATCAACAAGCTGGAAGGCAACTACAT
CTATGCTTCAAGGACCTTGCTGTTCCTGAAGGCCGATGGCACGCTGAAGCCCTTGGCCAT
CGAGCTGAGCCAGCCGCACCCCGATGGGATCCAGCATGGCGCAAAGAGCACGGTGTACCT
TCCAGCTGACATTAACTCTGGCGTTGATGGCCAGATCTGGCAGCTTGCCAAGGCTTACGC
CTCTGTCGACGACTCTGCGTGGCATCAGCTTATCAGCCACTGGCTGAACACACATGCGGT
GATCGAACCGTTCGTGATTGCGACGAACCGGCAACTCAGTGTGGTGCACCCGGTGCACAA
GCTGCTGAGCCCGCACTACCGCGACACGTTGAACATCAATGCCCTGGCGCGGACCACCCT
CATCAACGCCGGTGGCGTGTTCGAGCTGACCGTCTTCCCTGGGCAATACGCGCTTGAGAT
GTCTGCTGTTGTCTACAAGAACTGGAAGCTCACTGAGCAGGGCCTCCCTGACGATCTCGT
CAAGAGGGGCATGGCTGTGCCGGACGAATCGAGCCCATACGGCATCCGTCTGCTGATAAA
GGACTACCCATACGCGGTGGACGGACTGGTGATCTGGTGGGCGATCGAGCGGTGGGTGAA
CGAGTACCTGGCCATCTACTACCCAAATGACGGCGTGCTCCGGGCCGACAAGGAGCTGGA
GGAGTGGTGGAAGGAGGTGCGCGAGGTCGGGCACGGCGACCTCAAGGACGCCGACTGGTG
GCCCAAGATGGTGACCGTCCAGGAGCTGGCCAAGACGTGCACCACCATCATCTGGGTGGC
GTCGGCGCTGCACGCGGCGGTCAACTTTGGGCAGTACCCGTACGCGGGGTACCTCCCGAA
CCGGCCGACGGTGAGCCGTCGCCCAATGCCGAAGGAGGGCGACGAAGAGTACGAGCAGCT
GAAGGAGGGCGGGGAGGCGGCCGACATGGTGTTCATCCACACCATCACCAGCCAGTTCCA
GACCATCCTCGGCATCACGCTCATCGAGATCCTGTCCAAGCACTCCTCCGACGAGGTGTA
CCTGGGGCAGCGCGACACGCCGGAGTGGACGTCGGACGCCAAGGCGCTCGAGGCGTTCAA
GAGGTTCGGCAGCCGGCTGGTGGAGATCGAGAAGCGGATCCTCGACATGAACAAGGACCC
GGCGCTCAAGAACCGGAACGGGCCCGTGAAGATGCCCTACATGCTGCTGTACCCCAACAC
GTCGGACGCCAACGGGGAGAAGGCGCTGGGGCTCACCGCCATGGGCATCCCCAACAGCGT
CTCCATCTGAGCTGAGCATGGTCTTTGTTTCCTTCTTTCGGTAGTCGTCCGTCCGCTGGT
CATGGATCGGTTCGTGTCTCGCAAGGTGTATTGTGTTACTTTTCATTGGCTTCTGGGTGG
TTGCGGTAATTAGTTGCCAGGGATTAGTGGATGATGGAAAATGATGATTGTGTCGTAGAT
GATGTTGATAGGGTGAGGACAATGAGGCATGAATAAGCACTCGTGTGCGCATTCTTTTCA
TCTCCAAAAAAAAAAAAAAAAATTTCCCTTCTCTCTATTATCTCCATTTTCTTTACGGTT
TTGCTAATTTTCATCCGATTGAAAACAGTTCGGTACT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_55029.1	3816	0.0	735 - 3816	99	3070 / 3095	CUST_35459_PI390587928 CUST_35461_PI390587928	ABC01736 ABC01737 ABC42721
MLOC_55029.5	2652	0.0	270 - 2652	99	2375 / 2384	CUST_35461_PI390587928	ABC01736 ABC01737 ABC42721
MLOC_55029.4	3084	0.0	2572 - 3084	97	511 / 525	CUST_35461_PI390587928 CUST_35459_PI390587928	ABC01736 ABC01737 ABC42721
MLOC_55029.2	2807	0.0	1994 - 2807	99	811 / 815	CUST_35459_PI390587928	ABC01736 ABC01737
MLOC_55029.3	6580	1e-121	3495 - 3732	100	238 / 238	CUST_35461_PI390587928	ABC01736 ABC01737 ABC42721
MLOC_54031.1	2939	0.0	207 - 1731	79	1221 / 1555	CUST_22255_PI390587928 CUST_35462_PI390587928 CUST_11843_PI390587928 CUST_35460_PI390587928	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
AK355935	3049	0.0	1145 - 2664	76	1191 / 1557	CUST_35463_PI390587928 CUST_35455_PI390587928 CUST_20831_PI390587928 CUST_35458_PI390587928 CUST_42095_PI390587928	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
MLOC_37378.1	2107	0.0	199 - 1718	76	1191 / 1557	CUST_35463_PI390587928 CUST_35455_PI390587928 CUST_20831_PI390587928	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
MLOC_58726.1	2963	0.0	1655 - 2773	79	894 / 1137	None	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329
MLOC_54031.2	1718	2e-65	1057 - 1322	84	224 / 267	CUST_11843_PI390587928 CUST_35462_PI390587928	ABC01734 ABC01735 ABC01736 ABC01737 ABC42329
MLOC_37378.2	2181	4e-162	892 - 1673	80	639 / 798	CUST_35455_PI390587928 CUST_35463_PI390587928	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288