barSeed - Barley Seed Development Database

Probe CUST_35461_PI390587928

Source Contig U35_14195

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35461_PI390587928	Hv_44K_v2	TTGATAGGGTGAGGACAATGAGGCATGAATAAGCACTCGTGTGCGCATTCTTTTCATCTC	2958	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.962	1.699	1.866	1.022	0.285	0.276
Raw	2499.783	6899.880	6553.417	5653.427	554.657	581.192

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55029.5	2652	2e-24	2592 - 2651	100	60 / 60	plus	ABC01736 ABC01737 ABC42721
MLOC	MLOC_55029.4	3084	2e-24	2953 - 3012	100	60 / 60	plus	ABC01736 ABC01737 ABC42721
MLOC	MLOC_55029.3	6580	2e-24	6443 - 6502	100	60 / 60	plus	ABC01736 ABC01737 ABC42721
MLOC	MLOC_55029.1	3816	2e-24	3679 - 3738	100	60 / 60	plus	ABC01736 ABC01737 ABC42721
JLOC1	JLOC1_35465.1	3498	8e-25	3281 - 3340	100	60 / 60	plus
Harvest21	ABC01737	3097	3e-25	2945 - 3004	100	60 / 60	plus	ABC01737
Harvest35	U35_14195	3113	3e-25	2959 - 3018	100	60 / 60	plus

Contig Sequence (3113 bp)

>U35_14195 3113 Hv_44K_v2
TCGAGCACTGTTGGCCTACCCTACCACCACCACTGCCCTCCTTGTGCCAAGTGCATCAGC
AAGGGGACAGGCACCCACCGGTTGTGTTCCTCGTGCTCTGCTCTGCCCTGCCTCCGCTGC
AGAACCAGAGAGCAGAGGAGAGGAGAGATGCTGCTGCACGGGCTGGTGGACCGGCTGACG
GGGAAGAACAAGGAGGCGTGGAAGGAGGGCAAGATCCGGGGCACGGCGGTGCTGGTCAAG
AGCGACGTGCTCGACCTCGGCGACTTCCACGCCTCCCTCCTCGACGGCGTCCACAAGATC
CTCGGCAAGGACGACGGCGTCTCCTTCCGCCTCGTCAGCGCCACCGCCCCTGACCCACAG
AATGGGAGCCGGGGCAAGGTGGGGAAGCCGGCGCACCTGGAGGAGATGGTGGTGACGATG
AAGTCGACGGCGGCGGGGGAGTCGGTGTTCAAGGTCACCTTCGAGTGGGACGAGTCGCAG
GGCGTCCCCGGCGCCGTCATCGTCCGCAACACCTACCGCTCCGAGTACCTGCTCAAGACG
CTCACCCTCCACGGCGTCCCCGGCAAGGGCACCGTCGTCTTCGTCGCCAACTCCTGGATC
TACCCCAACGTCGACCGCCTCTTCTTCGCCAACGACACCTATCTGCCCAGCAAAATGCCT
GCACTTTTGGTGCAATACCGGCAAGATGAACTCAACAATCTCCGAGGCGACGACACGACC
GGAGAGTACAAGGAGGCTGACCGCGTGTACCGCTATGACTACTACAATGACCTCGGTGAG
CCAGACAACGACAATCCCCGCCCAGTTCTCGGCGGCACCCAAGAACTCCCCTATCCCCGT
CGTTGCAGAACTGGCCGACCACCAACAGAAACGGACCCTAGATCGGAGAGCAGAATTCCT
AAGTACAAGATTAAGGAGGCCCTGAACATCTATGTCCCCCGCGATGAGCGCTTTGGGCAC
CTCAAGTTGTCTGACTTCCTTGGGTACTCTCTCAAGGCCATCACGGAGGCCATTCTTCCG
ATAATCAGGACCTATGTTGACAGTACACCCAAGGAGTTTGATTCGTTTCAAGACATCTAT
AATCTCTATGATGGTCTTCTGAAAGTGCCAGATAACCAACACCTAAAGGAGCTCAAGAAT
AAAATCCCCCTTCAGTTTATTAAAAGTCTTTTACCAGTTGCTGGCGATGACCTCCTAAAC
TTGCCCCTTCCACATGTTATCAAATCAGATAAGTATGCTTGGAGGTCAGATGAGGAGTTT
GCACGGGAGATGCTCGCAGGCGTGAACCCGGTTTGCATCAGACGTCTGACGGAGTTCCCT
GTAAAAAGTACCCTGGATCCCAGTGTGTACGGGGACCAGTCAAGCACTATCACTGAAGAT
CAAATTCAGCTGAACCTGGAAGATGGCCTCACAGTGAGACAGGCAATGGACAAGAAGAGG
CTCTTCATTCTAGATCACCACGATAACTTCATGCCATTCCTTGACCGCATCAACAAGCTG
GAAGGCAACTACATCTATGCTTCAAGGACCTTGCTGTTCCTGAAGGCCGATGGCACGCTG
AAGCCCTTGGCCATCGAGCTGAGCCAGCCGCACCCCGATGGGATCCAGCATGGCGCAAAG
AGCACGGTGTACCTTCCAGCTGACATTAACTCTGGCGTTGATGGCCAGATCTGGCAGCTT
GCCAAGGCTTACGCCTCCGTCGACGACTCTGCGTGGCATCAGCTTATCAGCCACTGGCTG
AACACACATGCGGTGATCGAACCGTTCGTGATTGCGACGAACCGGCAACTCAGTGTGGTG
CACCCGGTGCACAAGCTGCTGAGCCCGCACTACCGCGACACGTTGAACATCAATGCCCTG
GCGCGGACCACCCTCATCAACGCCGGTGGCGTGTTCGAGCTGACCGTTTTCCCTGGGCAA
TACGCGCTTGAGATGTCTGCTGTTGTCTACAAGAACTGGAAGCTCACTGAGCAGGGCCTC
CCTGACGATCTCGTCAAGAGGGGCATGGCTGTGCCGGACGAATCGAGCCCATACGGCATC
CGTCTGCTGATAAAGGACTACCCATACGCGGTGGACGGACTGGTGATCTGGTGGGCGATC
GAGCGGTGGGTGAACGAGTACCTGGCCATCTACTACCCAAATGACGGCGTGCTCCGGGCC
GACAAGGAGCTGGAGGAGTGGTGGAAGGAGGTGCGCGAGGTCGGGCACGGCGACCTCAAG
GACGCCGACTGGTGGCCCAAGATGGTGACCGTCCAGGAGCTGGCCAAGACGTGCACCACC
ATCATCTGGGTGGCGTCGGCGCTGCACGCGGCGGTCAACTTTGGGCAGTACCCGTACGCG
GGGTACCTCCCGAACCGGCCGACGGTGAGCCGTCGCCCAATGCCGAAGGAGGGCGACGAA
GAGTACGAGCAGCTGAAGGAGGGCGGGGAGGCGGCCGACATGGTGTTCATCCACACCATC
ACCAGCCAGTTCCAGACCATCCTCGGCATCACGCTCATCGAGATCCTGTCCAAGCACTCC
TCCGACGAGGTGTACCTGGGGCAGCGCGACACGCCGGAGTGGACGTCGGACGCCAAGGCG
CTCGAGGCGTTCAAGAGGTTCGGCAGCCGGCTGGTGGAGATCGAGAAGCGGATCCTCGAC
ATGAACAAGGACCCGGCGCTCAAGAACCGGAACGGGCCCGTGAAGATGCCCTACATGCTG
CTGTACCCCAACACGTCGGACGCCAACGGGGAGAAGGCGCTGGGGCTCACCGCCATGGGC
ATCCCCAACAGCGTCTCCATCTGAGCTGAGCATGGTCTTTGTTTCCTTCTTTCGGTAGTC
GTCCGTCCGCTGGTCATGGATCGGTTCGTGTCTCGCAAGGTGTATTGTGTTACTTTTCAT
TGGCTTCTGGGTGGTTGCGGTAATTAGTTGCCAGGGATTAGTGGATGATGGAAAATGATG
ATTGTGTCGTAGATGATGTTGATAGGGTGAGGACAATGAGGCATGAATAAGCACTCGTGT
GCGCATTCTTTTCATCTCCAAAAAAAAAAAAAAAAAAATTTCCCTTCTCTCTATTATCTC
CATTTTCTTTACGGTTTTGCTAATTTTCATCCGATTGAAAACAGTTCGGTACT

Homology of Contig U35_14195 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g49380.1	878	protein\|lipoxygenase, putative, expressed
Brachypodium v1_2	Bradi1g11670.1	880
Arabidopsis v10	AT1G55020.1	859	\| Symbols: LOX1, ATLOX1 \| lipoxygenase 1 \| chr1:20525798-20530143 FORWARD LENGTH=859