barSeed - Barley Seed Development Database

Probe CUST_35463_PI390587928

Source Contig U35_14193

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35463_PI390587928	Hv_44K_v2	TCCTCTGTTTCTGGGTCAAGCTCAAGTTGCCCAAATAGTATCCAGATATTCTCCAAAAAA	3039	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.808	4.949	1.385	0.581	0.372	0.549
Raw	128.848	175.725	43.085	29.359	5.903	9.902

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37378.2	2181	6e-24	2005 - 2063	100	59 / 59	plus	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
MLOC	MLOC_37378.1	2107	2e-23	2050 - 2107	100	58 / 58	plus	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
MLOC	AK355935	3049	3e-21	2996 - 3049	100	54 / 54	plus	ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288
JLOC1	JLOC1_24201.2	2313	3e-24	1766 - 1824	100	59 / 59	plus
JLOC1	JLOC1_24201.1	2597	3e-24	2050 - 2108	100	59 / 59	plus
Harvest21	ABC01732	3083	3e-25	3013 - 3072	100	60 / 60	plus
Harvest35	U35_14193	3110	3e-25	3040 - 3099	100	60 / 60	plus

Contig Sequence (3110 bp)

>U35_14193 3110 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACACAGCAGCACCACAGCGAGCTAACTTAGCAAGCGTGC
CACACTCCCCAGAGATCGAGCGAAGATGTTTGGCGTCGGCGGCATCGTGAGCGACCTGAC
GGGGGGCCTCCGGGGCGCCCACCTCAAGGGCTCCGTCGTCCTCATGCGCAAGAACGCGCT
CGACTTCAACGACTTCGGCGCCACCGTCATGGACGGCGTCACCGAGCTCCTCGGCCGCGG
CGTCACCTGCCAGCTCATCAGCTCCACCAACGTCGACCACAACAACGGTGGGCGCGGGAA
GGTGGGCGCGGAGGCGAACCTGGAGCAGTGGCTCCTGCCGACGAACCTGCCGTTCATCAC
CACCGGCGAGAACAAGTTCGCCGTCACCTTCGACTGGTCGGTGGACAAGCTGGGGGTGCC
GGGCGCCATCATCGTCAAGAACAACCACGCCTCCGAGTTCTTCCTCAAGACCATCACCCT
CGACAACGTGCCCGGCCGCGGCACCATCGTCTTCGTCGCCAACTCATGGGTCTACCCGCA
GGCCAAGTACCGCTACAACCGCGTCTTCTTCGCCAACGACACGTACCTGCCGCACCAGAT
GCCGGCGGCGCTGAAGCCGTACCGCGACGACGAGCTCCGGAACCTGAGGGGCGACGACCA
GCAGGGGCCCTACCTGGACCACGACCGCGTCTACCGCTACGACGTCTACAACGACCTCGG
CGACTCCCGCGACGTCCTCGGCGGCTCCAAGGACCTCCCCTACCCGCGCCGCTGCCGCAC
CGGCCGGAAGCCCTCGGACAGCAAGCCCGACCACGAGAGCCGGCTGCTGCCGCTGGTGCA
GAACGTCTACGTGCCGCGCGACGAGCTCTTCGGCCACCTCAAGCAGTCGGACTTCCTGGG
CTACACGCTCAAGGCGCTGGTGGACGGGATCATACCGGCCATCCGCACCTACGTCGACCT
CTCCCCCGGCGAGTTCGACTCCTTCGCCGACATCCTCAAGCTCTACGAGGGCGGCATCAA
GCTGCCCAACATCCCGGCCCTCGAGGAGGTGCGCAAGCGCTTCCCGCTCCAGCTCGTCAA
GGACCTCATCCCCAAGGGCGGCGACTTCCTCCTCAAGCTCCCCAAGCCGGAGATCATCAA
GGTAGACCAGAAAGCGTGGATGACTGACGAGGAGTTCGCCAGGGAGATGCTCGCCGGCGT
CAACCCCATGATGATCAAACGCCTCACCGAGTTCCCTCCCAAGAGCACTCTGGATCCGAG
CAAGTACGGCGACCACACCAGCACCATGACCGAGGAGCACGTGGCCAAGAGCCTGGAGGG
CCTCACCGTGCAGCAGGCGCTCGCCGGCAACAGGCTCTACATCGTAGACCAGCACGACAA
CCTGATGCCGTTCCTGATCGACATCAACAACCTCGACGCCAGCTTCGTGTACGCCACAAG
GACGCTGCTCTTCCTGCGAGGGGACGGCACGCTGGCGCCGGTCGCCATCGAGCTGAGCTC
GCCGCTGATCCAGGGCGAGCTGACCACCGCCAAGAGCGCCGTGTACACGCCGCAGCACGC
CGGCGTGGAGGGCTGGATATGGCAGCTCGCCAAGGCCTACGCCTCCGTGAACGACTACGG
GTGGCACCAGCTCATCAGCCACTGGCTCAACACGCACGCCGTCATGGAGCCCTTCGTCAT
CGCCACCAACAGGCAGCTCAGCGTCACCCACCCGGTCTACAAGCTCCTGCACCCGCACTA
CCGCGACACCATGAACATCAACGCGCGGGCGCGCGGGCTGCTCATCAACGCCGGCGGCGT
CATCGAGATGACCGTGTTCCCGCACAAGCACGCCATGCCCATGTCCTCCATGGTCTACAA
GCACTGGAACTTCACCGAACAAGCTCTCCCCGCCGATCTAATCAAGAGGGGCATGGCGGT
GGAGGACGCATCGAGCCCGCACAAGGTGCGGCTGCTGATCAAGGACTACCCGTACGCGAC
CGACGGGCTGGCCGTGTGGGACGCCATCGAGCAGTGGGTGTCGGACTACCTGACCATCTA
CTACCCCAACGACGGCGTGCTGCAGGGCGACGTGGAGCTGCAGGCGTGGTGGAAGGAGGT
GAGGGAGGTCGGGCACGGCGACCTCAAGGACGCGGCGTGGTGGCCAAAGATGCAGACGGT
GGCGGAGCTGATCAAGGCGTGCGCCACCATCATCTGGACCGGGTCGGCGCTCCACGCGGC
CGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCGTCGGCGAGCCG
GAGGCCGATGCCGGTGCAGGGGAGCGAGGAGTACGCGGAGCTGGAGCGAGACCCGGAGAA
GGCCTTCATCCGCACCATCACCAGCCAGTTCCATGCCCTGGTGGGCATCTCGCTCATGGA
GATCCTCTCCAAGCACTCCTCCGACGAGGTCTACCTGGGCCAGCACGACACGCCGGCGTG
GACGTCGGACGCCAAGGCGCTGGAGGCGTTCAAGCGGTTCGGGGCGAAGCTGGAGGGCAT
CGAGAAGCAGGTGGTGGCCATGAACTCGGACCCGCAGCTAAAGAACCGCACCGGGCCGGC
CAAGTTCCCATACATGCTGCTCTACCCAAACACCTCCGACCACACGGGACAGGCCGAGGG
GCTCACCGCCAGGGGCATCCCGAACAGCATATCCATCTGATCTGAGCACGTCCGTCGTGG
AGACCTCATGCCTTTGTGCTATCCTTGCTTGCTTACACCGGAGCTAGCTTGTGTGTGTGT
GTGTGACAGAGAGTTGTGCCGGTGCATGAATAATTAAGGCAATAAATAAGGGTGCGTGCA
CGACGGGTCTGATCGGCATGCGGAAGCTCAGCTCAGCTGGCTACCGGTCAATGCATCGTC
GTGTGCAGAAAAAATCCCTTGTTTTGCCCAATAATGAAGTCGATGGTGTGATGTTCCCTC
CGGAAAAAAAAAAATTTTCTTCTTCTTGGCAAACCTCAGGCATTGTTGTGATCTTCAAAA
AAAAAAAAAAAAAGTTTGGGCGTTGCAAGCTCCTCTGTTTCCTCTGTTTCTGGGTCAAGC
TCAAGTTGCCCAAATAGTATCCAGATATTCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g52860.1	871	protein\|lipoxygenase, putative, expressed
Brachypodium v1_2	Bradi1g09270.1	864
Arabidopsis v10	AT3G22400.1	886	\| Symbols: LOX5 \| PLAT/LH2 domain-containing lipoxygenase family protein \| chr3:7927011-7931167 FORWARD LENGTH=886