- Probe CUST_35455_PI390587928
- Source Contig U35_14199
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35455_PI390587928 | Hv_44K_v2 | TCGTGTGCAGAAAAAATCCCTTGTTTTGCCCAATAATGAAGTCGATGGTGTGATGTTCCC | 438 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.542 | 5.289 | 1.231 | 0.646 | 0.281 | 0.731 |
| Raw | 4475.373 | 5002.827 | 1024.820 | 933.914 | 126.514 | 371.457 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355935 | 3049 | 2e-24 | 2851 - 2910 | 100 | 60 / 60 | plus | ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288 |
| MLOC | MLOC_37378.2 | 2181 | 2e-24 | 1860 - 1919 | 100 | 60 / 60 | plus | ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288 |
| MLOC | MLOC_37378.1 | 2107 | 2e-24 | 1905 - 1964 | 100 | 60 / 60 | plus | ABC01735 ABC01736 ABC01737 ABC34559 ABC42329 ABC48288 |
| JLOC1 | JLOC1_24201.2 | 2313 | 8e-25 | 1621 - 1680 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24201.1 | 2597 | 8e-25 | 1905 - 1964 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48288 | 206 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus | ABC48288 |
| Harvest21 | ABC34559 | 532 | 3e-25 | 28 - 87 | 100 | 60 / 60 | minus | ABC34559 |
| Harvest21 | ABC01738 | 712 | 3e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01732 | 3083 | 3e-25 | 2844 - 2903 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14199 | 525 | 3e-25 | 439 - 498 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14193 | 3110 | 3e-25 | 2879 - 2938 | 100 | 60 / 60 | plus |
Contig Sequence (525 bp)
>U35_14199 525 Hv_44K_v2 GGGCCAGCACGACACGCCGGCGTGGACGTCGGACGCCAAGGCGCTGGAGGCGTTCAAGCG GTTCGGGGCGAAGCTGGAGGGCATCGAGAAGCAGGTGGTGGCCATGAACTCGGACCCGCA GCTCAAGAACCGCACCGGGCCGGCCAAGTTCCCATACATGCTGCTCTACCCAAACACCTC CGACCACACGGGACAGGCCGAGGGGCTCACCGCCAGGGGCATCCCGAACAGCATATCCAT CTGATCTGAGCACGTCCGTCGTCGAGACCTCATGCTTTTGTGCTATCCTTGCTTGCTTAC ACCGGAGCTAGCTTGTGTGTGTGTGTGTGACAGAGAGTTGTGCCGGTGCATGAATAATTA AGGCAATAAGGGTGCGTGCACGACGGGTCTGATCGGCATGCGGAAGCTCAGCTCAGCTGG CTACCGGTCAATGCATCGTCGTGTGCAGAAAAAATCCCTTGTTTTGCCCAATAATGAAGT CGATGGTGTGATGTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_14199 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |