- Gene HORVU7Hr1G071060
- Gene IDHORVU7Hr1G071060
- Location chr7H: 387994236 - 387998276
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u53404 | 89.6 | - | - | 4041 | -472 | Containing |
Transcripts from Gene HORVU7Hr1G071060
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU7Hr1G071060.1 | 1820 | gene=HORVU7Hr1G071060 CDS=3-1223 |
| HORVU7Hr1G071060.2 | 1960 | gene=HORVU7Hr1G071060 CDS=3-611 |
| HORVU7Hr1G071060.3 | 1964 | gene=HORVU7Hr1G071060 CDS=3-611 |
| HORVU7Hr1G071060.4 | 1794 | gene=HORVU7Hr1G071060 CDS=395-1282 |
| HORVU7Hr1G071060.5 | 2082 | gene=HORVU7Hr1G071060 CDS=1-588 |
| HORVU7Hr1G071060.6 | 2022 | gene=HORVU7Hr1G071060 CDS=1034-1399 |
| HORVU7Hr1G071060.7 | 1890 | gene=HORVU7Hr1G071060 CDS=389-952 |
| HORVU7Hr1G071060.8 | 1979 | gene=HORVU7Hr1G071060 CDS=1223-1510 |
| HORVU7Hr1G071060.9 | 2026 | gene=HORVU7Hr1G071060 CDS=423-986 |
| HORVU7Hr1G071060.10 | 2260 | gene=HORVU7Hr1G071060 CDS=1265-1552 |
| HORVU7Hr1G071060.11 | 2003 | gene=HORVU7Hr1G071060 CDS=1257-1544 |
| HORVU7Hr1G071060.12 | 1850 | gene=HORVU7Hr1G071060 CDS=1-870 |
| HORVU7Hr1G071060.13 | 1938 | gene=HORVU7Hr1G071060 CDS=1-558 |
| HORVU7Hr1G071060.14 | 1882 | gene=HORVU7Hr1G071060 CDS=62-1240 |
| HORVU7Hr1G071060.15 | 1695 | gene=HORVU7Hr1G071060 CDS=3-1193 |
| HORVU7Hr1G071060.16 | 1806 | gene=HORVU7Hr1G071060 CDS=3-581 |
| HORVU7Hr1G071060.17 | 1875 | gene=HORVU7Hr1G071060 CDS=1035-1400 |
| HORVU7Hr1G071060.18 | 1972 | gene=HORVU7Hr1G071060 CDS=1235-1522 |
| HORVU7Hr1G071060.19 | 1847 | gene=HORVU7Hr1G071060 CDS=391-954 |
| HORVU7Hr1G071060.20 | 1886 | gene=HORVU7Hr1G071060 CDS=1307-1594 |
| HORVU7Hr1G071060.21 | 1560 | gene=HORVU7Hr1G071060 CDS=416-853 |
| HORVU7Hr1G071060.22 | 1590 | gene=HORVU7Hr1G071060 CDS=416-964 |
| HORVU7Hr1G071060.23 | 1865 | gene=HORVU7Hr1G071060 CDS=1260-1547 |
| HORVU7Hr1G071060.24 | 1623 | gene=HORVU7Hr1G071060 CDS=418-1305 |
| HORVU7Hr1G071060.25 | 1609 | gene=HORVU7Hr1G071060 CDS=1-558 |
| HORVU7Hr1G071060.26 | 1609 | gene=HORVU7Hr1G071060 CDS=391-939 |
| HORVU7Hr1G071060.27 | 1675 | gene=HORVU7Hr1G071060 CDS=453-1136 |
| HORVU7Hr1G071060.28 | 1675 | gene=HORVU7Hr1G071060 CDS=70-924 |
| HORVU7Hr1G071060.29 | 1562 | gene=HORVU7Hr1G071060 CDS=391-1263 |
| HORVU7Hr1G071060.30 | 1594 | gene=HORVU7Hr1G071060 CDS=1-582 |
| HORVU7Hr1G071060.31 | 1575 | gene=HORVU7Hr1G071060 CDS=1-855 |
| HORVU7Hr1G071060.32 | 1017 | gene=HORVU7Hr1G071060 CDS=1-1017 |
| HORVU7Hr1G071060.33 | 1159 | gene=HORVU7Hr1G071060 CDS=2-1159 |
Exon Structure of HORVU7Hr1G071060
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06050.1 | +3 | 7e-156 | 353 | 208/297 (70%) | protein|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed |
| TAIR PP10 | AT1G63990 @ ARAPORT AT1G63990.1 @ TAIR |
+3 | 3e-113 | 250 | 147/284 (52%) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383 |
| BRACH PP3 | Bradi3g16580.1.p | +3 | 4e-168 | 395 | 234/296 (79%) | pacid=32817968 transcript=Bradi3g16580.1 locus=Bradi3g16580 ID=Bradi3g16580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons