- Transcript HORVU7Hr1G071060.17
- Transcript IDHORVU7Hr1G071060.17
- Gene IDHORVU7Hr1G071060
Barley RTD
Exon Structure of HORVU7Hr1G071060.17
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 387994894 | 387994607 | - |
| chr7H | 2 | 387995344 | 387995023 | - |
| chr7H | 3 | 387996154 | 387996027 | - |
| chr7H | 4 | 387996306 | 387996230 | - |
| chr7H | 5 | 387996488 | 387996426 | - |
| chr7H | 6 | 387996656 | 387996577 | - |
| chr7H | 7 | 387997091 | 387996751 | - |
| chr7H | 8 | 387997326 | 387997189 | - |
| chr7H | 9 | 387997558 | 387997429 | - |
| chr7H | 10 | 387998228 | 387997921 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06050.1 | +3 | 0.0 | 546 | 305/410 (74%) | protein|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed |
| TAIR PP10 | AT1G63990 @ ARAPORT AT1G63990.1 @ TAIR |
+3 | 2e-140 | 414 | 225/396 (57%) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383 |
| BRACH PP3 | Bradi3g16580.1.p | +3 | 0.0 | 582 | 327/398 (82%) | pacid=32817968 transcript=Bradi3g16580.1 locus=Bradi3g16580 ID=Bradi3g16580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1875 bp)
>HORVU7Hr1G071060.17 1875 150831_barley_pseudomolecules CTCCGATGTAGGAAGTGCAGCGCGGATGGCGATGGCGGAGGCGGAGGCGGAGGCGGAGGC GGAGGTTCCCGCAGCGTCGCTCTTCGGTGCGGACTGCCGCCTCTGCTCAGCCGACGTGCT CTCGCCCCCCGAGGTCTGTCATACGCCAACTTCCCTCGTCCGCCTCTGCCTCTGATCGAA TCGACATGCTTTGCTTCTATTGTGTGTGGCCAACTCGATAGGTTCGGGCAAGGATCGAGG TGGCGGTGCTCAATTTCCTCGCCTTGCTTTCGTCTCCCTCTTCTCCGTCCATCTCCGTCC TCCCCCTGATTTCCCGCAAGTCCACCAACTGCAGCCTGCGCAGCGGCTTGCTGAGTGATG TTTCATCGGTGTATCTGTCCTACGCCTTCTGCAAGAGGTCGCTAATGAGAGAAAATGATG CCAAGGCATTCGTCAGAGTATGGAAAGTCATGGAGATGTGCTACAAGATCTTGGGCGAAG GGAAGCTTGTCACCCAGCGGGAGTTGTTCTACAAACTACTGTCGGACTCACCCAAGTACT TCAGCTGTCAGCGTCATGTGAATCAAACCATCCAAGATGTTGTTTCATTGCTCCGTTGCA CAAGGCAGAGTTTAGGAATCATGGCATCAAGTAGAGGGGCACTGATTGGACGACTTGTGT TGCATGTGTGTGTATGCTGAAAAGTGGTTTGCCTGATACAAATATGTGCTGTCTGTTAAG GGAATCAATACAACTCTTGTTTGCCTCCTCATGAAACTGCAACAGCCTCAACTTTGTGTT CATCTTAGGAACCAGAGGAAGAACACATCGATTGTTCCATTCTCGGACCTTCTGGGCATG CCATTACTGGGGATCTGAACCAATTGAGCAGATTAAATTTGTCTTCAGATGCCCGTTATC TCATTCTAGTGGAGAAGAGGCTGGCTGAAGACCGCTTATATAATCAGCTTCCATGTATCC TGATCACTGCAAAAGGATATCCTGATATCGCAACGAGGTTTATCTTGCATCGACTGAGCC AGACTTTTCCAAATATGCCAATATTTGCATTAGTGGACTGGAACCCTGCAGGGCTCTCTA TACTGTGTACTTACAAATATGGAAGCATATCAATGGGCTTGGAATCATACAGATACGCTT GCAATGTAAAATGGCTTGGCCTAAGAGGAGATGATCTGCAGCTTATCCCTCAGAGTTCAT TCCAAGAGTTGAAACCTCGTGATTTGCAGGTCGCCAAAAGCTTGCTGTCATCTAAGTTTC TTCAGGACACGCACAGAGCGGAGTTGACACGGATGGTCGAGACGGGCACGCGTGCTGAGA TCGAAGCTCTCTATTGCCATGGTTTTGATTTCCTGGGGAAGTTCATCGCCAGGAAGATTG TGCAGGGTGATTACATTTGACAGTGTTTTTTCTCTCTGGCTGTATGGCTCATGATGACGA GGCTACTGGTACAGTAGTGTGAGTGTCTCTGTTAATTGGAGAGCGATATCGCCCATGGCT CATTATGGCTGGTGAGGTCTGAACTTTGACATGCATAGAACAAAACGGATAGTAAAAGTT CTCCCTCTGAGAGTGGAACGATAGCAAGCCTTGGTCGTTCTTTGCTTCCTTTACTTTCTG AGAGAAGGCCACTACAACGATGCCCTGGAAGCAGAGATCCATGTTGTGGCAGCTGGTATG ATAATGCGTGGTAGTGACGGGGCGATAGAGGCTGTTTGGATTGAGCCAGGGTCCGCCTCG CCGACCGCGGGCGCGCCAATTTATTGCCGGCCGATTCCGCCGCCCGTGTCTCGCTAACAA ATTGGTGCTGGATTGTAGACAGGTAAGGCCAGGGCGCATCAATTACTTCCCCCATTCCTA AATATAAGTTTTTTA