- Transcript HORVU7Hr1G071060.3
- Transcript IDHORVU7Hr1G071060.3
- Gene IDHORVU7Hr1G071060
Barley RTD
Exon Structure of HORVU7Hr1G071060.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 387994410 | 387994236 | - |
| chr7H | 2 | 387994894 | 387994660 | - |
| chr7H | 3 | 387995344 | 387995023 | - |
| chr7H | 4 | 387996154 | 387996027 | - |
| chr7H | 5 | 387996327 | 387996230 | - |
| chr7H | 6 | 387996488 | 387996426 | - |
| chr7H | 7 | 387996671 | 387996577 | - |
| chr7H | 8 | 387997091 | 387996751 | - |
| chr7H | 9 | 387997326 | 387997189 | - |
| chr7H | 10 | 387997558 | 387997429 | - |
| chr7H | 11 | 387998007 | 387997921 | - |
| chr7H | 12 | 387998247 | 387998096 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06050.1 | +3 | 0.0 | 577 | 321/425 (76%) | protein|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed |
| TAIR PP10 | AT1G63990 @ ARAPORT AT1G63990.1 @ TAIR |
+3 | 7e-145 | 426 | 235/421 (56%) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383 |
| BRACH PP3 | Bradi3g16580.1.p | +3 | 0.0 | 621 | 348/424 (82%) | pacid=32817968 transcript=Bradi3g16580.1 locus=Bradi3g16580 ID=Bradi3g16580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1964 bp)
>HORVU7Hr1G071060.3 1964 150831_barley_pseudomolecules GGCCAGCTGCCATATCGTCCTCCGATGTAGGAAGTGCAGCGCGGATGGCGATGGCGGAGG CGGAGGCGGAGGCGGAGGCGGAGGTTCCCGCAGCGTCGCTCTTCGGTGCGGACTGCCGCC TCTGCTCAGCCGACGTGCTCTCGCCCCCCGAGGTTCGGGCAAGGATCGAGGTGGCGGTGC TCAATTTCCTCGCCTTGCTTTCGTCTCCCTCTTCTCCGTCCATCTCCGTCCTCCCCCTGA TTTCCCGCAAGTCCACCAACTGCAGCCTGCGCAGCGGCTTGCTGAGTGATGTTTCATCGG TGTATCTGTCCTACGCCTTCTGCAAGAGGTCGCTAATGAGAGAAAATGATGCCAAGGCAT TCGTCAGAGTATGGAAAGTCATGGAGATGTGCTACAAGATCTTGGGCGAAGGGAAGCTTG TCACCCAGCGGGAGTTGTTCTACAAACTACTGTCGGACTCACCCAAGTACTTCAGCTGTC AGCGTCATGTGAATCAAACCATCCAAGATGTTGTTTCATTGCTCCGTTGCACAAGGCAGA GTTTAGGAATCATGGCATCAAGTAGAGGGGCACTGATTGGACGACTTGTGTTGCATGTGT GTGTATGCTGAAAAGTGGTTTGCCTGATACAAATATGTGCTGTCTGTTAAGGGAATCAAT ACAACTCTTGTTTGCCTCCTCATGAAACTGCAACAGCCTCAACTTTGTGTTCATCTTAGG AACCAGAGGAAGAACACATCGATTGTTCCATTCTCGGACCTTCTGGGCATGCCATTACTG GGGATCTGAACCAATTGAGCAGATTAAATTTGTCTTCAGATGCCCGTTATCTCATTCTAG TGGAGAAGGATGCCATATTTCAGAGGCTGGCTGAAGACCGCTTATATAATCAGCTTCCAT GTATCCTGATCACTGCAAAAGGATATCCTGATATCGCAACGAGGTTTATCTTGCATCGAC TGAGCCAGACTTTTCCAAATATGCCAATATTTGCATTAGTGGACTGTTAGATTCCTTCCC AATTCAGGAACCCTGCAGGGCTCTCTATACTGTGTACTTACAAATATGGAAGCATATCAA TGGGCTTGGAATCATACAGATACGCTTGCAATGTAAAATGGCTTGGCCTAAGAGGAGATG ATCTGCAGCTTATCCCTCAGAGTTCATTCCAAGAGTTGAAACCTCGTGATTTGCAGGTCG CCAAAAGCTTGCTGTCATCTAAGTTTCTTCAGGACACGCACAGAGCGGAGTTGACACGGA TGGTCGAGACGGGCACGCGTGCTGAGATCGAAGCTCTCTATTGCCATGGTTTTGATTTCC TGGGGAAGTTCATCGCCAGGAAGATTGTGCAGGGTGATTACATTTGACAGTGTTTTTTCT CTCTGGCTGTATGGCTCATGATGACGAGGCTACTGGTACAGTAGTGTGAGTGTCTCTGTT AATTGGAGAGCGATATCGCCCATGGCTCATTATGGCTGGTGAGGTCTGAACTTTGACATG CATAGAACAAAACGGATAGTAAAAGTTCTCCCTCTGAGAGTGGAACGATAGCAAGCCTTG GTCGTTCTTTGCTTCCTTTACTTTCTGAGAGAAGGCCACTACAACGATGCCCTGGAAGCA GAGATCCATGTTGTGGCAGCTGGTATGATAATGCGTGGTAGTGACGGGGCGATAGAGGCT GTTTGGATTGAGCCAGGGTCCGCCTCGCCGACCGCGGGCGCGCCAATTTATTGCCGGCCG ATTCCGCCGCCCGTGTCTCGCTAACAAATTGGTGCTGGATTGTAGACAGGCGTCAATCCA AACAGCCCTATATTTGCAGCCTACGCTTCATCTTCCACTACAACGATGCCCTCGAAGCAG AGATCCATGTTTTGCAAGGTATGGTTTTTTCCATCAACATACTGCTCTGGTCATTGTCCA CTAGGATTCTTTTGTCGCTTTGAAGACCCTGTCTACTTTTGGTG