Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU7Hr1G07106089.6--4041-472Containing




Transcripts from Gene BART1_0-u53404

TranscriptLength(bp)Description
BART1_0-u53404.00125702570 bp MSTRG.53404.1 MSTRG.53404
BART1_0-u53404.00226202620 bp MSTRG.53404.2 MSTRG.53404
BART1_0-u53404.00321852185 bp MSTRG.53404.3 MSTRG.53404
BART1_0-u53404.00420692069 bp MSTRG.53404.4 MSTRG.53404
BART1_0-u53404.00518381838 bp MSTRG.53404.5 MSTRG.53404
BART1_0-u53404.00619121912 bp MSTRG.53404.6 MSTRG.53404
BART1_0-u53404.00719031903 bp MSTRG.53404.7 MSTRG.53404
BART1_0-u53404.00817401740 bp MSTRG.53404.8 MSTRG.53404
BART1_0-u53404.00918341834 bp MSTRG.53404.9 MSTRG.53404
BART1_0-u53404.01015881588 bp MSTRG.53404.10 MSTRG.53404
BART1_0-u53404.01115591559 bp MSTRG.53404.11 MSTRG.53404
BART1_0-u53404.01215731573 bp MSTRG.53404.12 MSTRG.53404
BART1_0-u53404.01313851385 bp MSTRG.53404.13 MSTRG.53404



Exon Structure of BART1_0-u53404


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g06050.1 +2 0.0 617 322/377 (85%) protein|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
TAIR PP10 AT1G63990 @ ARAPORT
AT1G63990.1 @ TAIR
+2 7e-157 464 236/373 (63%) Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383
BRACH PP3 Bradi3g16580.1.p +2 0.0 664 349/376 (93%) pacid=32817968 transcript=Bradi3g16580.1 locus=Bradi3g16580 ID=Bradi3g16580.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0016889endodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0008094DNA-dependent ATPase activity
GO:0000706meiotic DNA double-strand break processing
GO:0000737DNA catabolic process, endonucleolytic
GO:0009555pollen development
GO:0048316seed development
GO:0048437floral organ development
GO:0005694chromosome
GO:0009553embryo sac development
GO:0042138meiotic DNA double-strand break formation
GO:0051026chiasma assembly
GO:0003677DNA binding
GO:0005524ATP binding
GO:0005634nucleus
GO:0005515protein binding
GO:0046872metal ion binding
GO:0016021integral component of membrane
GO:0016853isomerase activity



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons