- Gene BART1_0-u53404
- Gene IDBART1_0-u53404
- Location chr7H: 387993815 - 387998327
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU7Hr1G071060 | 89.6 | - | - | 4041 | -472 | Containing |
Transcripts from Gene BART1_0-u53404
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u53404.001 | 2570 | 2570 bp MSTRG.53404.1 MSTRG.53404 |
BART1_0-u53404.002 | 2620 | 2620 bp MSTRG.53404.2 MSTRG.53404 |
BART1_0-u53404.003 | 2185 | 2185 bp MSTRG.53404.3 MSTRG.53404 |
BART1_0-u53404.004 | 2069 | 2069 bp MSTRG.53404.4 MSTRG.53404 |
BART1_0-u53404.005 | 1838 | 1838 bp MSTRG.53404.5 MSTRG.53404 |
BART1_0-u53404.006 | 1912 | 1912 bp MSTRG.53404.6 MSTRG.53404 |
BART1_0-u53404.007 | 1903 | 1903 bp MSTRG.53404.7 MSTRG.53404 |
BART1_0-u53404.008 | 1740 | 1740 bp MSTRG.53404.8 MSTRG.53404 |
BART1_0-u53404.009 | 1834 | 1834 bp MSTRG.53404.9 MSTRG.53404 |
BART1_0-u53404.010 | 1588 | 1588 bp MSTRG.53404.10 MSTRG.53404 |
BART1_0-u53404.011 | 1559 | 1559 bp MSTRG.53404.11 MSTRG.53404 |
BART1_0-u53404.012 | 1573 | 1573 bp MSTRG.53404.12 MSTRG.53404 |
BART1_0-u53404.013 | 1385 | 1385 bp MSTRG.53404.13 MSTRG.53404 |
Exon Structure of BART1_0-u53404
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g06050.1 | +2 | 0.0 | 617 | 322/377 (85%) | protein|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed |
TAIR PP10 | AT1G63990 @ ARAPORT AT1G63990.1 @ TAIR |
+2 | 7e-157 | 464 | 236/373 (63%) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383 |
BRACH PP3 | Bradi3g16580.1.p | +2 | 0.0 | 664 | 349/376 (93%) | pacid=32817968 transcript=Bradi3g16580.1 locus=Bradi3g16580 ID=Bradi3g16580.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0016889 | endodeoxyribonuclease activity, producing 3'-phosphomonoesters |
GO:0008094 | DNA-dependent ATPase activity |
GO:0000706 | meiotic DNA double-strand break processing |
GO:0000737 | DNA catabolic process, endonucleolytic |
GO:0009555 | pollen development |
GO:0048316 | seed development |
GO:0048437 | floral organ development |
GO:0005694 | chromosome |
GO:0009553 | embryo sac development |
GO:0042138 | meiotic DNA double-strand break formation |
GO:0051026 | chiasma assembly |
GO:0003677 | DNA binding |
GO:0005524 | ATP binding |
GO:0005634 | nucleus |
GO:0005515 | protein binding |
GO:0046872 | metal ion binding |
GO:0016021 | integral component of membrane |
GO:0016853 | isomerase activity |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons