- Transcript HORVU7Hr1G071060.2
- Transcript IDHORVU7Hr1G071060.2
- Gene IDHORVU7Hr1G071060
Barley RTD
Exon Structure of HORVU7Hr1G071060.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 387994410 | 387994236 | - |
| chr7H | 2 | 387994894 | 387994660 | - |
| chr7H | 3 | 387995344 | 387995023 | - |
| chr7H | 4 | 387996154 | 387996027 | - |
| chr7H | 5 | 387996323 | 387996230 | - |
| chr7H | 6 | 387996488 | 387996426 | - |
| chr7H | 7 | 387996671 | 387996577 | - |
| chr7H | 8 | 387997091 | 387996751 | - |
| chr7H | 9 | 387997326 | 387997189 | - |
| chr7H | 10 | 387997558 | 387997429 | - |
| chr7H | 11 | 387998007 | 387997921 | - |
| chr7H | 12 | 387998247 | 387998096 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06050.1 | +3 | 6e-125 | 376 | 219/304 (72%) | protein|OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed |
| TAIR PP10 | AT1G63990 @ ARAPORT AT1G63990.1 @ TAIR |
+3 | 4e-81 | 261 | 162/335 (48%) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383 |
| BRACH PP3 | Bradi3g16580.1.p | +3 | 1e-143 | 423 | 248/303 (82%) | pacid=32817968 transcript=Bradi3g16580.1 locus=Bradi3g16580 ID=Bradi3g16580.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1960 bp)
>HORVU7Hr1G071060.2 1960 150831_barley_pseudomolecules GGCCAGCTGCCATATCGTCCTCCGATGTAGGAAGTGCAGCGCGGATGGCGATGGCGGAGG CGGAGGCGGAGGCGGAGGCGGAGGTTCCCGCAGCGTCGCTCTTCGGTGCGGACTGCCGCC TCTGCTCAGCCGACGTGCTCTCGCCCCCCGAGGTTCGGGCAAGGATCGAGGTGGCGGTGC TCAATTTCCTCGCCTTGCTTTCGTCTCCCTCTTCTCCGTCCATCTCCGTCCTCCCCCTGA TTTCCCGCAAGTCCACCAACTGCAGCCTGCGCAGCGGCTTGCTGAGTGATGTTTCATCGG TGTATCTGTCCTACGCCTTCTGCAAGAGGTCGCTAATGAGAGAAAATGATGCCAAGGCAT TCGTCAGAGTATGGAAAGTCATGGAGATGTGCTACAAGATCTTGGGCGAAGGGAAGCTTG TCACCCAGCGGGAGTTGTTCTACAAACTACTGTCGGACTCACCCAAGTACTTCAGCTGTC AGCGTCATGTGAATCAAACCATCCAAGATGTTGTTTCATTGCTCCGTTGCACAAGGCAGA GTTTAGGAATCATGGCATCAAGTAGAGGGGCACTGATTGGACGACTTGTGTTGCATGTGT GTGTATGCTGAAAAGTGGTTTGCCTGATACAAATATGTGCTGTCTGTTAAGGGAATCAAT ACAACTCTTGTTTGCCTCCTCATGAAACTGCAACAGCCTCAACTTTGTGTTCATCTTAGG AACCAGAGGAAGAACACATCGATTGTTCCATTCTCGGACCTTCTGGGCATGCCATTACTG GGGATCTGAACCAATTGAGCAGATTAAATTTGTCTTCAGATGCCCGTTATCTCATTCTAG TGGAGAAGGATGCCATATTTCAGAGGCTGGCTGAAGACCGCTTATATAATCAGCTTCCAT GTATCCTGATCACTGCAAAAGGATATCCTGATATCGCAACGAGGTTTATCTTGCATCGAC TGAGCCAGACTTTTCCAAATATGCCAATATTTGCATTAGTGGACTGATTCCTTCCCAATT CAGGAACCCTGCAGGGCTCTCTATACTGTGTACTTACAAATATGGAAGCATATCAATGGG CTTGGAATCATACAGATACGCTTGCAATGTAAAATGGCTTGGCCTAAGAGGAGATGATCT GCAGCTTATCCCTCAGAGTTCATTCCAAGAGTTGAAACCTCGTGATTTGCAGGTCGCCAA AAGCTTGCTGTCATCTAAGTTTCTTCAGGACACGCACAGAGCGGAGTTGACACGGATGGT CGAGACGGGCACGCGTGCTGAGATCGAAGCTCTCTATTGCCATGGTTTTGATTTCCTGGG GAAGTTCATCGCCAGGAAGATTGTGCAGGGTGATTACATTTGACAGTGTTTTTTCTCTCT GGCTGTATGGCTCATGATGACGAGGCTACTGGTACAGTAGTGTGAGTGTCTCTGTTAATT GGAGAGCGATATCGCCCATGGCTCATTATGGCTGGTGAGGTCTGAACTTTGACATGCATA GAACAAAACGGATAGTAAAAGTTCTCCCTCTGAGAGTGGAACGATAGCAAGCCTTGGTCG TTCTTTGCTTCCTTTACTTTCTGAGAGAAGGCCACTACAACGATGCCCTGGAAGCAGAGA TCCATGTTGTGGCAGCTGGTATGATAATGCGTGGTAGTGACGGGGCGATAGAGGCTGTTT GGATTGAGCCAGGGTCCGCCTCGCCGACCGCGGGCGCGCCAATTTATTGCCGGCCGATTC CGCCGCCCGTGTCTCGCTAACAAATTGGTGCTGGATTGTAGACAGGCGTCAATCCAAACA GCCCTATATTTGCAGCCTACGCTTCATCTTCCACTACAACGATGCCCTCGAAGCAGAGAT CCATGTTTTGCAAGGTATGGTTTTTTCCATCAACATACTGCTCTGGTCATTGTCCACTAG GATTCTTTTGTCGCTTTGAAGACCCTGTCTACTTTTGGTG