Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5181297.1++5982-180Containing




Transcripts from Gene HORVU7Hr1G044850

TranscriptLength(bp)Description
HORVU7Hr1G044850.13492gene=HORVU7Hr1G044850 CDS=1139-2890
HORVU7Hr1G044850.23553gene=HORVU7Hr1G044850 CDS=875-2599
HORVU7Hr1G044850.34119gene=HORVU7Hr1G044850 CDS=1138-2835
HORVU7Hr1G044850.43094gene=HORVU7Hr1G044850 CDS=1-2766
HORVU7Hr1G044850.53817gene=HORVU7Hr1G044850 CDS=931-2655
HORVU7Hr1G044850.63459gene=HORVU7Hr1G044850 CDS=2-2383
HORVU7Hr1G044850.74138gene=HORVU7Hr1G044850 CDS=1132-2829
HORVU7Hr1G044850.83137gene=HORVU7Hr1G044850 CDS=925-3027
HORVU7Hr1G044850.93426gene=HORVU7Hr1G044850 CDS=2-2377
HORVU7Hr1G044850.103710gene=HORVU7Hr1G044850 CDS=920-2644
HORVU7Hr1G044850.113609gene=HORVU7Hr1G044850 CDS=920-2809
HORVU7Hr1G044850.122850gene=HORVU7Hr1G044850 CDS=1-2349
HORVU7Hr1G044850.133530gene=HORVU7Hr1G044850 CDS=919-2616
HORVU7Hr1G044850.143054gene=HORVU7Hr1G044850 CDS=919-2670
HORVU7Hr1G044850.153476gene=HORVU7Hr1G044850 CDS=918-2615
HORVU7Hr1G044850.163467gene=HORVU7Hr1G044850 CDS=1124-2875
HORVU7Hr1G044850.173404gene=HORVU7Hr1G044850 CDS=2-2374
HORVU7Hr1G044850.183305gene=HORVU7Hr1G044850 CDS=913-2637
HORVU7Hr1G044850.193276gene=HORVU7Hr1G044850 CDS=781-2505
HORVU7Hr1G044850.203643gene=HORVU7Hr1G044850 CDS=892-2589
HORVU7Hr1G044850.213032gene=HORVU7Hr1G044850 CDS=1-2367
HORVU7Hr1G044850.222538gene=HORVU7Hr1G044850 CDS=1-2361
HORVU7Hr1G044850.232905gene=HORVU7Hr1G044850 CDS=501-2225



Exon Structure of HORVU7Hr1G044850


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g19470.2 +1 0.0 588 409/654 (63%) protein|WW domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g43210.1.p +1 0.0 701 475/656 (72%) pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons