- Transcript HORVU7Hr1G044850.4
- Transcript IDHORVU7Hr1G044850.4
- Gene IDHORVU7Hr1G044850
Barley RTD
Exon Structure of HORVU7Hr1G044850.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679402 | + |
| chr7H | 2 | 140680207 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140683501 | 140683422 | + |
| chr7H | 7 | 140684053 | 140683958 | + |
| chr7H | 8 | 140684216 | 140684143 | + |
| chr7H | 9 | 140684701 | 140684566 | + |
| chr7H | 10 | 140685382 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 848 | 565/851 (66%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | AT3G13225 @ ARAPORT AT3G13225.1 @ TAIR |
+1 | 1e-34 | 142 | 105/183 (57%) | Symbols: | WW domain-containing protein | chr3:4258928-4261728 REVERSE LENGTH=771 |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 1003 | 653/854 (76%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3094 bp)
>HORVU7Hr1G044850.4 3094 150831_barley_pseudomolecules CGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCT GATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACC CTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGG GCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGT AGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGA GTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGAT AAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAGGATGAA GTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAG GTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCT GCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATCACAGAA AATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACA GTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAAT TGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTTACAGGA GAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACT TCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCC CACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCAACCTAT ACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCAT GAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGA TTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAA ATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCA TTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAA GCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCT AATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACT CTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCT GCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAA GATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACT TCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCA TTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCA GAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCT GAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGA GGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACA GATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAG CAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACA TCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACT GAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGT GAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTG GAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGG GCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACC ACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTG AGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGTGGAAAGCTGCAAAAGAGGAGCTT TGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGG AAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCT AATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCA AAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCT GATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCT ACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGC AAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACAT CTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGAT CGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACT TGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCC TTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCA ATTATATTCGATTTTAGGTTGTGCTAAATTCTAG