- Transcript HORVU7Hr1G044850.22
- Transcript IDHORVU7Hr1G044850.22
- Gene IDHORVU7Hr1G044850
Barley RTD
Exon Structure of HORVU7Hr1G044850.22
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140680383 | 140680380 | + |
| chr7H | 2 | 140680803 | 140680682 | + |
| chr7H | 3 | 140681781 | 140681165 | + |
| chr7H | 4 | 140683083 | 140681885 | + |
| chr7H | 5 | 140683501 | 140683422 | + |
| chr7H | 6 | 140684053 | 140683958 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685054 | 140684845 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 776 | 537/856 (63%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 913 | 616/855 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2538 bp)
>HORVU7Hr1G044850.22 2538 150831_barley_pseudomolecules TCAGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAG GATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGT GCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAA CTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATC ACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGT GTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGT GGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTT ACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGA GTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTC CTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCA ACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCT AGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTG CAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAA AGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTA CTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAG TTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAA GCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTT AGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACA TCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGT GATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGA TTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTG TCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCA CCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCT CCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCA TACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCT GGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAA TCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAG ACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCT GCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCT AGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAAT CCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCA GTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACT AGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCA TCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGTGGAAAGCTGCAAAAGAG GAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAA CGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAA AATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCT GAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGA GAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGAATGTCGTTGTT CTAGTACAAAATTTGTACTAACTTAGTGTTAAATGTGCGACACTTATTTTGGGACGGAGG GAGTACGAAGTATAGCTATGATTTTCTTTAACGCAACCTGTTCTTTGCTCGCAGGCATAC ATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGG GATCGGCCTAGCAAATAA