Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G044850	97.1	+	+	5982	-180	Containing

Transcripts from Gene BART1_0-u51812

Transcript	Length(bp)	Description
BART1_0-u51812.001	3890	3890 bp MSTRG.51812.1 MSTRG.51812
BART1_0-u51812.002	3697	3697 bp MSTRG.51812.2 MSTRG.51812
BART1_0-u51812.003	3423	3423 bp MSTRG.51812.3 MSTRG.51812
BART1_0-u51812.004	4228	4228 bp MSTRG.51812.4 MSTRG.51812
BART1_0-u51812.005	3890	3890 bp MSTRG.51812.5 MSTRG.51812
BART1_0-u51812.006	3959	3959 bp MSTRG.51812.6 MSTRG.51812
BART1_0-u51812.007	3701	3701 bp MSTRG.51812.7 MSTRG.51812
BART1_0-u51812.008	3259	3259 bp MSTRG.51812.8 MSTRG.51812
BART1_0-u51812.009	4408	4408 bp MSTRG.51812.9 MSTRG.51812
BART1_0-u51812.010	3828	3828 bp MSTRG.51812.10 MSTRG.51812
BART1_0-u51812.011	3810	3810 bp MSTRG.51812.11 MSTRG.51812
BART1_0-u51812.012	3445	3445 bp MSTRG.51812.12 MSTRG.51812
BART1_0-u51812.013	3386	3386 bp MSTRG.51812.13 MSTRG.51812
BART1_0-u51812.014	3581	3581 bp MSTRG.51812.14 MSTRG.51812
BART1_0-u51812.015	3962	3962 bp MSTRG.51812.15 MSTRG.51812
BART1_0-u51812.016	3453	3453 bp MSTRG.51812.16 MSTRG.51812
BART1_0-u51812.017	4104	4104 bp MSTRG.51812.17 MSTRG.51812
BART1_0-u51812.018	3858	3858 bp MSTRG.51812.18 MSTRG.51812
BART1_0-u51812.019	3873	3873 bp MSTRG.51812.19 MSTRG.51812
BART1_0-u51812.020	3700	3700 bp MSTRG.51812.20 MSTRG.51812
BART1_0-u51812.021	3510	3510 bp MSTRG.51812.21 MSTRG.51812
BART1_0-u51812.022	3910	3910 bp MSTRG.51812.22 MSTRG.51812
BART1_0-u51812.023	3825	3825 bp MSTRG.51812.23 MSTRG.51812
BART1_0-u51812.024	3418	3418 bp MSTRG.51812.24 MSTRG.51812
BART1_0-u51812.025	3211	3211 bp MSTRG.51812.25 MSTRG.51812
BART1_0-u51812.026	3876	3876 bp MSTRG.51812.26 MSTRG.51812
BART1_0-u51812.027	3556	3556 bp MSTRG.51812.27 MSTRG.51812
BART1_0-u51812.028	3404	3404 bp MSTRG.51812.28 MSTRG.51812
BART1_0-u51812.029	3245	3245 bp MSTRG.51812.29 MSTRG.51812
BART1_0-u51812.030	3671	3671 bp MSTRG.51812.30 MSTRG.51812
BART1_0-u51812.031	3583	3583 bp MSTRG.51812.31 MSTRG.51812
BART1_0-u51812.032	3635	3635 bp MSTRG.51812.32 MSTRG.51812
BART1_0-u51812.033	3663	3663 bp MSTRG.51812.33 MSTRG.51812
BART1_0-u51812.034	3552	3552 bp MSTRG.51812.34 MSTRG.51812
BART1_0-u51812.035	3547	3547 bp MSTRG.51812.35 MSTRG.51812
BART1_0-u51812.036	3968	3968 bp MSTRG.51812.36 MSTRG.51812
BART1_0-u51812.037	3743	3743 bp MSTRG.51812.37 MSTRG.51812
BART1_0-u51812.038	4137	4137 bp MSTRG.51812.38 MSTRG.51812
BART1_0-u51812.039	3724	3724 bp MSTRG.51812.39 MSTRG.51812
BART1_0-u51812.040	3603	3603 bp MSTRG.51812.40 MSTRG.51812
BART1_0-u51812.041	3272	3272 bp MSTRG.51812.41 MSTRG.51812
BART1_0-u51812.042	3797	3797 bp MSTRG.51812.42 MSTRG.51812
BART1_0-u51812.043	3945	3945 bp MSTRG.51812.43 MSTRG.51812
BART1_0-u51812.044	2930	2930 bp MSTRG.51812.44 MSTRG.51812

Exon Structure of BART1_0-u51812

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os06g19470.2	+1	0.0	590	414/674 (61%)	protein|WW domain containing protein, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi1g43210.1.p	+1	0.0	702	480/676 (71%)	pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016021	integral component of membrane

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons