- Transcript HORVU7Hr1G044850.2
- Transcript IDHORVU7Hr1G044850.2
- Gene IDHORVU7Hr1G044850
Exon Structure of HORVU7Hr1G044850.2
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 140679678 | 140679401 | + |
chr7H | 2 | 140680417 | 140680127 | + |
chr7H | 3 | 140680803 | 140680682 | + |
chr7H | 4 | 140681781 | 140681165 | + |
chr7H | 5 | 140683083 | 140681885 | + |
chr7H | 6 | 140684053 | 140683422 | + |
chr7H | 7 | 140684216 | 140684143 | + |
chr7H | 8 | 140684701 | 140684566 | + |
chr7H | 9 | 140685174 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g19470.1 | +2 | 0.0 | 631 | 436/693 (63%) | protein|WW domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 749 | 503/695 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3553 bp)
>HORVU7Hr1G044850.2 3553 150831_barley_pseudomolecules CCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCC TGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAAC CCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGG GGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCG TAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGG AGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGG TGGGTTCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTA AATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGA GGCACATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGC CACTGTCAAAACTGGGTGTGTTCCTACCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGG GCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAAC TAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGG GGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATC TCAAGCCGATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCC TGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGG CATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAA TCAGTGTTACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATT AGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTA CTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGA TGTATCTGTTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGC TTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCT TGCAAAATATGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGC CATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGC ACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAA GCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCT GGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGA GGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATAT TAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGC TATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGA AGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATC AGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGA TAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACC GGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGT TCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCC AGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCA AGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGC AAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTA TAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTA TGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTC CCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCC TACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACA TGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAA GAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGT GGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCT CTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAA CTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTT GGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAAC ATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATT TCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTG GTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTCCTTATTAATCTACCT TTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTGGAAAGCTGCAAAAGA GGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAA ACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGA AAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGC TGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGG AGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGA CGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCG GCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCT CATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACT GGGAGATCGTAGC