Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u21354	95.9	-	-	6357	-273	Containing

Transcripts from Gene HORVU3Hr1G060430

Transcript	Length(bp)	Description
HORVU3Hr1G060430.1	2446	gene=HORVU3Hr1G060430 CDS=193-1530
HORVU3Hr1G060430.2	2375	gene=HORVU3Hr1G060430 CDS=2-1459
HORVU3Hr1G060430.3	2600	gene=HORVU3Hr1G060430 CDS=998-1759
HORVU3Hr1G060430.4	1567	gene=HORVU3Hr1G060430 CDS=1-1566
HORVU3Hr1G060430.5	1541	gene=HORVU3Hr1G060430 CDS=1-1470
HORVU3Hr1G060430.6	2068	gene=HORVU3Hr1G060430 CDS=1014-1775
HORVU3Hr1G060430.7	1836	gene=HORVU3Hr1G060430 CDS=318-1655
HORVU3Hr1G060430.8	1856	gene=HORVU3Hr1G060430 CDS=914-1675
HORVU3Hr1G060430.9	1645	gene=HORVU3Hr1G060430 CDS=3-1466
HORVU3Hr1G060430.10	1669	gene=HORVU3Hr1G060430 CDS=155-1492

Exon Structure of HORVU3Hr1G060430

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g47540.1	+2	3e-153	457	239/324 (74%)	protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10	AT5G46410 @ ARAPORT AT5G46410.1 @ TAIR	+2	6e-68	233	106/159 (67%)	Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453
BRACH PP3	Bradi2g45880.1.p	+2	6e-179	523	265/327 (81%)	pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons