- Transcript HORVU3Hr1G060430.1
- Transcript IDHORVU3Hr1G060430.1
- Gene IDHORVU3Hr1G060430
Barley RTD
Exon Structure of HORVU3Hr1G060430.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 460556581 | 460556342 | - |
| chr3H | 2 | 460557509 | 460556681 | - |
| chr3H | 3 | 460558032 | 460557695 | - |
| chr3H | 4 | 460558583 | 460558101 | - |
| chr3H | 5 | 460558898 | 460558793 | - |
| chr3H | 6 | 460559814 | 460559714 | - |
| chr3H | 7 | 460560666 | 460560479 | - |
| chr3H | 8 | 460561746 | 460561660 | - |
| chr3H | 9 | 460562575 | 460562502 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g47540.1 | +1 | 0.0 | 578 | 312/448 (70%) | protein|NLI interacting factor-like phosphatase, putative, expressed |
| TAIR PP10 | AT5G46410 @ ARAPORT AT5G46410.1 @ TAIR |
+1 | 2e-68 | 234 | 106/159 (67%) | Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453 |
| BRACH PP3 | Bradi2g45880.1.p | +1 | 0.0 | 657 | 340/449 (76%) | pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2446 bp)
>HORVU3Hr1G060430.1 2446 150831_barley_pseudomolecules CCGCCTCCGGGAGAGGCCGAGAGAGAGGGAGAGAGGGAGGACGCGCCGGAGCTACCCGCG CCAGCATCGCCTCGATCCGTGTTGTACTCCTTGACCGACTATGGCTTTTATCAATTCAAA GTCAGATTCATTCCAAGCCTTCCGTCTAAAACATAACTTAGACAGTTTTGGCAGTCTGAA CTGCTGATCAAGATGCCAGCACTGAGAATGAAGAGGAAGTTTGATGATGACATTTTCGGG AGTGAGTTTGACATCAAATCCATGAAATCGGTGAAAATCTCGCCTTCCCAAGTTGATGAG TTCGAGCAGGCATTTGTGTTAAACTCGTCTTACAAGGACCCTCAGGATGAGCCTGAGCCG ATAACTCAACTAGCTGTCCAGGATATTAGGGTTACAGAATTTTCCGGTTTGCATGCTGTA CTTGGAGGAACATCCGTTGCTCTGCTGAAGGATTTAATATCTGAAACTGTGGTTCCACCA AATTTGGAACCTGATTCTTTATCTAATAATGATGATGGCAAATCTCAGTCAAATGTAGTG AACACCGGTGATAAAGAGTTTGCAGATGAAGATGTAAATTCTGCAGCACAAGATATCTGT ACTGTCAATGATCATGAGAAAAGCCTGGGCTCAAACCCGGATTGCAGCCTGTTGGATATT TATAATCCTGATGATGCTTTTCCTTTCTTATTTGATGTTCCAACTGGTCTCCTGGCTAGC TACAGTACATTTTGTGATGAATTTGTACCCATCGATTCATTGACAGACATGAGTGGCATA TGCGGAGTATTTCCACTTAATGAGAGCACCGTGGAAGGTTGCATTGGCAATGAACCATGC CCATCACAAGGGGATATGTGCTTTAATAACTTTGGTGGGGAGTGCTTTAGCCATTCTGAG GTTTTAGAGTGGTTTAATCCATATATGGATGAGTCTGATGTACCTAATCTTATTGGTTAT ACCGAGTTGAGCTCAGATGCTGCTTGTGTATCTAAAGAGCAAGGGGCCAGGAAGGTCACT CTTGTGCTTGATTTGGATGAAACCCTTGTTCATTCAACTCTGGAGCACTGTGATGATGCA GATTTTTCTTTTCCAGTGTCCTTTGGTCTGAAAGAACATGTGGTATATGTGAGGAAGAGA CCACATTTGCATATGTTCCTCCAGAAGATGGCTGAGATGTTTGACGTTGTTATATTCACA GCCAGCCAAAGTGTTTATGCAGACCAGCTGCTTGACAGGCTTGATCCAGAGAACACATTG TTCTCGAAGCGTTTTTTCCGCGAGTCATGTGTATTTACGGAAAGTGGCTACACAAAAGAT CTGACTGTTATTGGAGTTGACCTTGCAAAGGTTGCCATAATTGACAACACTCCGCAGGTT TTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAGCTGGTATAATGACCCCTTTGAT GAGGGATTATCTCAGCTGATTCCATTCCTGGAGACACTTGCTGTTGCTGATGACGTCCGA CCCATAATTGCCAAGAGGTTTGGCAACTAAAAGGATAATGGCTGAGGTTTTCCAGCAGGT GTTAGGAAGAGTTTGTTGGTTACTCACATAGAGGGACAAGAACTTACATGACACATTGAC CGAGCTAGTTGAGACTTGCCTTTTTCTTAATTTTATTTACATGGGTTTCATAGGATCAAG AATTTTGGTGGCAGAGCTATTTCTCGTGAATTGTAAATATCCTCAAACACTGTTATAGAA TTTTGTACATAAAAACTGTTAGAAATGAAAGCGAAACTCTCTAAAATTTCTTCTTTGCCA CATTGTCATTGTCTATGTTCAGCTGTCTACTATTCAGTGTTTTTTCTGTTTCATGATGTC AACTACTCCCTCTGTCCTACAATGTAAAACGTTTTTGCAAGCTAACATATTTGCAAGTTA CATTGTGGAACGGAGGGAGCAGAATTGATTTTGTAACACAACTGTCTGATATCTTCTGCT AAGATAAATTATCATGTTTGACTCTTGTCTATTCATACGTAAATTAGATACCTGGCACGT GGAGATTGTTCTGAATACTTATCTTTGTCTGATGTGGGGATCTAGGCTATCCAGCTACTA CAAAGGTGAAATTTCATGTAAAAGTCACGCCTGTCTGCCATATTGTTCGCCGCAGTTCCT CCAACACGCAGCAATGCAATTGTTAAAATGAGGCAAGAGTCTAGAGGTCTTAGTTGCCAC TTGAAGCCATTCTGAACTTGACTCAGAGCCAGGAGCACCAACCATTATCTAGCGCCTGTG TCTAACAAAACAAGACCATTATTACTCCGATACATATTACTTGGCCGATACATATTACTT GTAGCTTAAATGGATGTATTTAGCACTGAAGTACGTCTAGATACACATGTTTTATCAATA AGTAATATGGCTCGTACGTCTAGATACACACGTTTCATCAATAAGT