- Transcript HORVU3Hr1G060430.6
- Transcript IDHORVU3Hr1G060430.6
- Gene IDHORVU3Hr1G060430
Barley RTD
Exon Structure of HORVU3Hr1G060430.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 460557509 | 460557064 | - |
| chr3H | 2 | 460558032 | 460557695 | - |
| chr3H | 3 | 460558898 | 460558101 | - |
| chr3H | 4 | 460559814 | 460559714 | - |
| chr3H | 5 | 460560666 | 460560479 | - |
| chr3H | 6 | 460562698 | 460562502 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g47540.1 | +3 | 1e-155 | 457 | 239/324 (74%) | protein|NLI interacting factor-like phosphatase, putative, expressed |
| TAIR PP10 | AT5G46410 @ ARAPORT AT5G46410.1 @ TAIR |
+3 | 4e-69 | 233 | 106/159 (67%) | Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453 |
| BRACH PP3 | Bradi2g45880.1.p | +3 | 0.0 | 523 | 265/327 (81%) | pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2068 bp)
>HORVU3Hr1G060430.6 2068 150831_barley_pseudomolecules GAGACCGAGCCCTCATAATTCTCCTCTCCCCTCTTGTGATTCCGGTGCGTCTTCCCCTCC TCTCTGCCTGCCTGCGCGCACCGGTCTCCCCCCCCCCCCCTCCCTCTCTTCCTCCGTCCG CCTCCGCCTCCGGGAGAGGCCGAGAGAGAGGGAGAGAGGGAGGACGCGCCGGAGCTACCC GCGCCAGCATCGCCTCGACAGTTTTGGCAGTCTGAACTGCTGATCAAGATGCCAGCACTG AGAATGAAGAGGAAGTTTGATGATGACATTTTCGGGAGTGAGTTTGACATCAAATCCATG AAATCGGTGAAAATCTCGCCTTCCCAAGTTGATGAGTTCGAGCAGGCATTTGTGTTAAAC TCGTCTTACAAGGACCCTCAGGATGAGCCTGAGCCGATAACTCAACTAGCTGTCCAGGAT ATTAGGGTTACAGAATTTTCCGGTTTGCATGCTGTACTTGGAGGAACATCCGTTGCTCTG CTGAAGGATTTAATATCTGAAACTGTGGTTCCACCAAATTTGGAACCTGATTCTTTATCT AATAATGATGATGGCAAATCTCAGTCAAATGTAGTGAACACCGGTGATAAAGGTAAGGAG TACCCCTTACCCCTCGAGCAGTTTTTGTAACTAATGTGGCTAGTTTAGGTGATAAGTTTT TGTTCACGGCCAATGTCTATTTGTCTGCACGTATAAAAATACACAGCCGCCAAATGCAAT GTTTTAGAGAACACATTTGATATGCTCACAAGCAAGGTTTAACCTTTGCATGTGTATATT CACTTACAATTTGCATTGCAGAGTTTGCAGATGAAGATGTAAATTCTGCAGCACAAGATA TCTGTACTGTCAATGATCATGAGAAAAGCCTGGGCTCAAACCCGGATTGCAGCCTGTTGG ATATTTATAATCCTGATGATGCTTTTCCTTTCTTATTTGATGTTCCAACTGGTCTCCTGG CTAGCTACAGTACATTTTGTGATGAATTTGTACCCATCGATTCATTGACAGACATGAGTG GCATATGCGGAGTATTTCCACTTAATGAGAGCACCGTGGAAGGTTGCATTGGCAATGAAC CATGCCCATCACAAGGGGATATGTGCTTTAATAACTTTGGTGGGGAGTGCTTTAGCCATT CTGAGGTTTTAGAGTGGTTTAATCCATATATGGATGAGTCTGATGTACCTAATCTTATTG GTTATACCGAGTTGAGCTCAGATGCTGCTTGTGTATCTAAAGAGCAAGGGGCCAGGAAGG TCACTCTTGTGCTTGATTTGGATGAAACCCTTGTTCATTCAACTCTGGAGCACTGTGATG ATGCAGATTTTTCTTTTCCAGTGTCCTTTGGTCTGAAAGAACATGTGGTATATGTGAGGA AGAGACCACATTTGCATATGTTCCTCCAGAAGATGGCTGAGATGTTTGACGTTGTTATAT TCACAGCCAGCCAAAGTGTTTATGCAGACCAGCTGCTTGACAGGCTTGATCCAGAGAACA CATTGTTCTCGAAGCGTTTTTTCCGCGAGTCATGTGTATTTACGGAAAGTGGCTACACAA AAGATCTGACTGTTATTGGAGTTGACCTTGCAAAGGTTGCCATAATTGACAACACTCCGC AGGTTTTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAGCTGGTATAATGACCCCT TTGATGAGGGATTATCTCAGCTGATTCCATTCCTGGAGACACTTGCTGTTGCTGATGACG TCCGACCCATAATTGCCAAGAGGTTTGGCAACTAAAAGGATAATGGCTGAGGTTTTCCAG CAGGTGTTAGGAAGAGTTTGTTGGTTACTCACATAGAGGGACAAGAACTTACATGACACA TTGACCGAGCTAGTTGAGACTTGCCTTTTTCTTAATTTTATTTACATGGGTTTCATAGGA TCAAGAATTTTGGTGGCAGAGCTATTTCTCGTGAATTGTAAATATCCTCAAACACTGTTA TAGAATTTTGTACATAAAAACTGTTAGAAATGAAAGCGAAACTCTCTAAAATTTCTTCTT TGCCACATTGTCATTGTCTATGTTCAGC