Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G060430.3

ChromosomeExonStartStopDirection
chr3H1460556581460556417-
chr3H2460557509460556681-
chr3H3460558032460557695-
chr3H4460558898460558101-
chr3H5460559814460559714-
chr3H6460560666460560479-
chr3H7460561746460561660-
chr3H8460562595460562502-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g47540.1 +2 3e-153 457 239/324 (74%) protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10 AT5G46410 @ ARAPORT
AT5G46410.1 @ TAIR		 +2 6e-68 233 106/159 (67%) Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453
BRACH PP3 Bradi2g45880.1.p +2 6e-179 523 265/327 (81%) pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2600 bp)

>HORVU3Hr1G060430.3 2600 150831_barley_pseudomolecules
CTCTCTTCCTCCGTCCGCCTCCGCCTCCGGGAGAGGCCGAGAGAGAGGGAGAGAGGGAGG
ACGCGCCGGAGCTACCCGCGCCAGCATCGCCTCGATCCGTGTTGTACTCCTTGACCGACT
ATGGCTTTTATCAATTCAAAGTCAGATTCATTCCAAGCCTTCCGTCTAAAACATAACTTA
GACAGTTTTGGCAGTCTGAACTGCTGATCAAGATGCCAGCACTGAGAATGAAGAGGAAGT
TTGATGATGACATTTTCGGGAGTGAGTTTGACATCAAATCCATGAAATCGGTGAAAATCT
CGCCTTCCCAAGTTGATGAGTTCGAGCAGGCATTTGTGTTAAACTCGTCTTACAAGGACC
CTCAGGATGAGCCTGAGCCGATAACTCAACTAGCTGTCCAGGATATTAGGGTTACAGAAT
TTTCCGGTTTGCATGCTGTACTTGGAGGAACATCCGTTGCTCTGCTGAAGGATTTAATAT
CTGAAACTGTGGTTCCACCAAATTTGGAACCTGATTCTTTATCTAATAATGATGATGGCA
AATCTCAGTCAAATGTAGTGAACACCGGTGATAAAGGTAAGGAGTACCCCTTACCCCTCG
AGCAGTTTTTGTAACTAATGTGGCTAGTTTAGGTGATAAGTTTTTGTTCACGGCCAATGT
CTATTTGTCTGCACGTATAAAAATACACAGCCGCCAAATGCAATGTTTTAGAGAACACAT
TTGATATGCTCACAAGCAAGGTTTAACCTTTGCATGTGTATATTCACTTACAATTTGCAT
TGCAGAGTTTGCAGATGAAGATGTAAATTCTGCAGCACAAGATATCTGTACTGTCAATGA
TCATGAGAAAAGCCTGGGCTCAAACCCGGATTGCAGCCTGTTGGATATTTATAATCCTGA
TGATGCTTTTCCTTTCTTATTTGATGTTCCAACTGGTCTCCTGGCTAGCTACAGTACATT
TTGTGATGAATTTGTACCCATCGATTCATTGACAGACATGAGTGGCATATGCGGAGTATT
TCCACTTAATGAGAGCACCGTGGAAGGTTGCATTGGCAATGAACCATGCCCATCACAAGG
GGATATGTGCTTTAATAACTTTGGTGGGGAGTGCTTTAGCCATTCTGAGGTTTTAGAGTG
GTTTAATCCATATATGGATGAGTCTGATGTACCTAATCTTATTGGTTATACCGAGTTGAG
CTCAGATGCTGCTTGTGTATCTAAAGAGCAAGGGGCCAGGAAGGTCACTCTTGTGCTTGA
TTTGGATGAAACCCTTGTTCATTCAACTCTGGAGCACTGTGATGATGCAGATTTTTCTTT
TCCAGTGTCCTTTGGTCTGAAAGAACATGTGGTATATGTGAGGAAGAGACCACATTTGCA
TATGTTCCTCCAGAAGATGGCTGAGATGTTTGACGTTGTTATATTCACAGCCAGCCAAAG
TGTTTATGCAGACCAGCTGCTTGACAGGCTTGATCCAGAGAACACATTGTTCTCGAAGCG
TTTTTTCCGCGAGTCATGTGTATTTACGGAAAGTGGCTACACAAAAGATCTGACTGTTAT
TGGAGTTGACCTTGCAAAGGTTGCCATAATTGACAACACTCCGCAGGTTTTCCAGTTGCA
AGTGAATAATGGTATACCCATAGAGAGCTGGTATAATGACCCCTTTGATGAGGGATTATC
TCAGCTGATTCCATTCCTGGAGACACTTGCTGTTGCTGATGACGTCCGACCCATAATTGC
CAAGAGGTTTGGCAACTAAAAGGATAATGGCTGAGGTTTTCCAGCAGGTGTTAGGAAGAG
TTTGTTGGTTACTCACATAGAGGGACAAGAACTTACATGACACATTGACCGAGCTAGTTG
AGACTTGCCTTTTTCTTAATTTTATTTACATGGGTTTCATAGGATCAAGAATTTTGGTGG
CAGAGCTATTTCTCGTGAATTGTAAATATCCTCAAACACTGTTATAGAATTTTGTACATA
AAAACTGTTAGAAATGAAAGCGAAACTCTCTAAAATTTCTTCTTTGCCACATTGTCATTG
TCTATGTTCAGCTGTCTACTATTCAGTGTTTTTTCTGTTTCATGATGTCAACTACTCCCT
CTGTCCTACAATGTAAAACGTTTTTGCAAGCTAACATATTTGCAAGTTACATTGTGGAAC
GGAGGGAGCAGAATTGATTTTGTAACACAACTGTCTGATATCTTCTGCTAAGATAAATTA
TCATGTTTGACTCTTGTCTATTCATACGTAAATTAGATACCTGGCACGTGGAGATTGTTC
TGAATACTTATCTTTGTCTGATGTGGGGATCTAGGCTATCCAGCTACTACAAAGGTGAAA
TTTCATGTAAAAGTCACGCCTGTCTGCCATATTGTTCGCCGCAGTTCCTCCAACACGCAG
CAATGCAATTGTTAAAATGAGGCAAGAGTCTAGAGGTCTTAGTTGCCACTTGAAGCCATT
CTGAACTTGACTCAGAGCCAGGAGCACCAACCATTATCTAGCGCCTGTGTCTAACAAAAC
AAGACCATTATTACTCCGATACATATTACTTGGCCGATACATATTACTTGTAGCTTAAAT
GGATGTATTTAGCACTGAAG