- Gene BART1_0-u21354
- Gene IDBART1_0-u21354
- Location chr3H: 460556328 - 460562957
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU3Hr1G060450 | 3.0 | - | - | 199 | -6431 | Containing |
HORVU3Hr1G060430 | 95.9 | - | - | 6357 | -273 | Containing |
HORVU3Hr1G060460 | 3.5 | - | - | 229 | -6401 | Containing |
Transcripts from Gene BART1_0-u21354
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u21354.001 | 4859 | 4859 bp MSTRG.21354.1 MSTRG.21354 |
BART1_0-u21354.002 | 2717 | 2717 bp MSTRG.21354.2 MSTRG.21354 |
BART1_0-u21354.003 | 2621 | 2621 bp MSTRG.21354.3 MSTRG.21354 |
BART1_0-u21354.004 | 2936 | 2936 bp MSTRG.21354.4 MSTRG.21354 |
BART1_0-u21354.005 | 3791 | 3791 bp MSTRG.21354.5 MSTRG.21354 |
BART1_0-u21354.006 | 2573 | 2573 bp MSTRG.21354.6 MSTRG.21354 |
BART1_0-u21354.007 | 2821 | 2821 bp MSTRG.21354.7 MSTRG.21354 |
BART1_0-u21354.008 | 2623 | 2623 bp MSTRG.21354.8 MSTRG.21354 |
BART1_0-u21354.009 | 2729 | 2729 bp MSTRG.21354.9 MSTRG.21354 |
BART1_0-u21354.010 | 1868 | 1868 bp MSTRG.21354.10 MSTRG.21354 |
BART1_0-u21354.011 | 2142 | 2142 bp MSTRG.21354.11 MSTRG.21354 |
BART1_0-u21354.012 | 1919 | 1919 bp MSTRG.21354.12 MSTRG.21354 |
BART1_0-u21354.013 | 2630 | 2630 bp MSTRG.21354.13 MSTRG.21354 |
BART1_0-u21354.014 | 1949 | 1949 bp MSTRG.21354.14 MSTRG.21354 |
BART1_0-u21354.015 | 2765 | 2765 bp MSTRG.21354.15 MSTRG.21354 |
BART1_0-u21354.016 | 1911 | 1911 bp MSTRG.21354.16 MSTRG.21354 |
BART1_0-u21354.017 | 1811 | 1811 bp MSTRG.21354.17 MSTRG.21354 |
BART1_0-u21354.018 | 2654 | 2654 bp MSTRG.21354.18 MSTRG.21354 |
BART1_0-u21354.019 | 1114 | 1114 bp MSTRG.21354.19 MSTRG.21354 |
Exon Structure of BART1_0-u21354
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g47540.1 | +3 | 1e-158 | 490 | 260/364 (71%) | protein|NLI interacting factor-like phosphatase, putative, expressed |
TAIR PP10 | AT5G46410 @ ARAPORT AT5G46410.1 @ TAIR |
+3 | 8e-67 | 234 | 106/159 (67%) | Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453 |
BRACH PP3 | Bradi2g45880.1.p | +3 | 0.0 | 549 | 283/365 (78%) | pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0005634 | nucleus |
GO:0003677 | DNA binding |
GO:0140096 | catalytic activity, acting on a protein |
GO:0003700 | DNA-binding transcription factor activity |
GO:0016791 | phosphatase activity |
GO:0006464 | cellular protein modification process |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0016311 | dephosphorylation |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons