Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU3Hr1G0604503.0--199-6431Containing
HORVU3Hr1G06043095.9--6357-273Containing
HORVU3Hr1G0604603.5--229-6401Containing




Transcripts from Gene BART1_0-u21354

TranscriptLength(bp)Description
BART1_0-u21354.00148594859 bp MSTRG.21354.1 MSTRG.21354
BART1_0-u21354.00227172717 bp MSTRG.21354.2 MSTRG.21354
BART1_0-u21354.00326212621 bp MSTRG.21354.3 MSTRG.21354
BART1_0-u21354.00429362936 bp MSTRG.21354.4 MSTRG.21354
BART1_0-u21354.00537913791 bp MSTRG.21354.5 MSTRG.21354
BART1_0-u21354.00625732573 bp MSTRG.21354.6 MSTRG.21354
BART1_0-u21354.00728212821 bp MSTRG.21354.7 MSTRG.21354
BART1_0-u21354.00826232623 bp MSTRG.21354.8 MSTRG.21354
BART1_0-u21354.00927292729 bp MSTRG.21354.9 MSTRG.21354
BART1_0-u21354.01018681868 bp MSTRG.21354.10 MSTRG.21354
BART1_0-u21354.01121422142 bp MSTRG.21354.11 MSTRG.21354
BART1_0-u21354.01219191919 bp MSTRG.21354.12 MSTRG.21354
BART1_0-u21354.01326302630 bp MSTRG.21354.13 MSTRG.21354
BART1_0-u21354.01419491949 bp MSTRG.21354.14 MSTRG.21354
BART1_0-u21354.01527652765 bp MSTRG.21354.15 MSTRG.21354
BART1_0-u21354.01619111911 bp MSTRG.21354.16 MSTRG.21354
BART1_0-u21354.01718111811 bp MSTRG.21354.17 MSTRG.21354
BART1_0-u21354.01826542654 bp MSTRG.21354.18 MSTRG.21354
BART1_0-u21354.01911141114 bp MSTRG.21354.19 MSTRG.21354



Exon Structure of BART1_0-u21354


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g47540.1 +3 1e-158 490 260/364 (71%) protein|NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10 AT5G46410 @ ARAPORT
AT5G46410.1 @ TAIR
+3 8e-67 234 106/159 (67%) Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453
BRACH PP3 Bradi2g45880.1.p +3 0.0 549 283/365 (78%) pacid=32780084 transcript=Bradi2g45880.1 locus=Bradi2g45880 ID=Bradi2g45880.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0005634nucleus
GO:0003677DNA binding
GO:0140096catalytic activity, acting on a protein
GO:0003700DNA-binding transcription factor activity
GO:0016791phosphatase activity
GO:0006464cellular protein modification process
GO:0006355regulation of transcription, DNA-templated
GO:0016311dephosphorylation



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons