Probe CUST_724_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_724_PI426222305 | JHI_St_60k_v1 | DMT400052182 | GAGTAGGAAAACCAATTGTCCCTGTGGCTGTGAATCATATTAATACTACAACAGTATTTA |
All Microarray Probes Designed to Gene DMG403020240
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1071_PI426222305 | JHI_St_60k_v1 | DMT400052185 | CTAGTTAACAAGATCAAAGAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAAAAAA |
| CUST_724_PI426222305 | JHI_St_60k_v1 | DMT400052182 | GAGTAGGAAAACCAATTGTCCCTGTGGCTGTGAATCATATTAATACTACAACAGTATTTA |
| CUST_1023_PI426222305 | JHI_St_60k_v1 | DMT400052184 | TAACAAACAATGGCTCTTACGGCCGCCGTTCATATTTCCGATGTCCCCAATCTAGATCAA |
| CUST_869_PI426222305 | JHI_St_60k_v1 | DMT400052183 | TCTGCTTGTCAAGAATCTCCAGACTTGTTACCCTAAAAATTATGCAGTTTGTTCACCACA |
Microarray Signals from CUST_724_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 19.0146 | 10.2631 | 1.88507 | 0.981267 |
| ABA 1h | 10.5687 | 2.95431 | 1.42811 | 0.509485 |
| ACC 1h | 15.927 | 6.19235 | 1.74081 | 0.6043 |
| BABA 1h | 9.98013 | 3.2243 | 1.27091 | 0.469283 |
| Chitin 1h | 6.50447 | 2.98485 | 0.918678 | 0.452543 |
| Epi 1h | 9.03277 | 2.97157 | 1.29135 | 0.494326 |
| SA 1h | 7.71089 | 3.04349 | 0.949294 | 0.404869 |
| Me-JA 1h | 5.43931 | 3.06093 | 0.872622 | 0.485975 |
| Control 6h | 5.85146 | 3.06309 | 0.753654 | 0.402487 |
| ABA 6h | 53.5563 | 24.7631 | 5.39123 | 2.34843 |
| ACC 6h | 6.19124 | 3.67293 | 0.68921 | 0.399341 |
| BABA 6h | 6.55961 | 3.43729 | 0.758611 | 0.403407 |
| Chitin 6h | 6.45091 | 3.40735 | 0.786125 | 0.42105 |
| Epi 6h | 11.0028 | 4.52942 | 1.08926 | 0.574699 |
| SA 6h | 11.6454 | 3.33776 | 1.41029 | 0.600671 |
| Me-JA 6h | 14.3233 | 4.83115 | 1.69174 | 0.469104 |
Source Transcript PGSC0003DMT400052182 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc02g094400.2 | +1 | 3e-142 | 278 | 142/176 (81%) | genomic_reference:SL2.50ch02 gene_region:49509646-49511664 transcript_region:SL2.50ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase |
| TAIR PP10 | AT3G02040.1 | +1 | 1e-94 | 187 | 95/177 (54%) | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361 |