Probe CUST_1071_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1071_PI426222305 | JHI_St_60k_v1 | DMT400052185 | CTAGTTAACAAGATCAAAGAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAAAAAA |
All Microarray Probes Designed to Gene DMG403020240
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1071_PI426222305 | JHI_St_60k_v1 | DMT400052185 | CTAGTTAACAAGATCAAAGAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAAAAAA |
| CUST_724_PI426222305 | JHI_St_60k_v1 | DMT400052182 | GAGTAGGAAAACCAATTGTCCCTGTGGCTGTGAATCATATTAATACTACAACAGTATTTA |
| CUST_1023_PI426222305 | JHI_St_60k_v1 | DMT400052184 | TAACAAACAATGGCTCTTACGGCCGCCGTTCATATTTCCGATGTCCCCAATCTAGATCAA |
| CUST_869_PI426222305 | JHI_St_60k_v1 | DMT400052183 | TCTGCTTGTCAAGAATCTCCAGACTTGTTACCCTAAAAATTATGCAGTTTGTTCACCACA |
Microarray Signals from CUST_1071_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 602.362 | 207.592 | 4.80778 | 1.38108 |
| ABA 1h | 183.824 | 33.7509 | 1.78948 | 0.285882 |
| ACC 1h | 310.091 | 101.695 | 2.3627 | 0.794156 |
| BABA 1h | 181.998 | 74.4074 | 1.41814 | 0.530804 |
| Chitin 1h | 58.2839 | 8.41343 | 0.568524 | 0.050326 |
| Epi 1h | 166.081 | 35.4513 | 1.62927 | 0.376972 |
| SA 1h | 129.622 | 39.736 | 1.00307 | 0.331161 |
| Me-JA 1h | 87.3377 | 9.21247 | 0.948497 | 0.0681729 |
| Control 6h | 71.6513 | 53.6617 | 0.345983 | 0.405214 |
| ABA 6h | 808.882 | 326.22 | 5.82977 | 2.12844 |
| ACC 6h | 96.4532 | 55.2816 | 0.52683 | 0.316737 |
| BABA 6h | 47.9407 | 16.0513 | 0.336318 | 0.12905 |
| Chitin 6h | 100.198 | 26.7232 | 0.771078 | 0.270675 |
| Epi 6h | 51.4083 | 22.8017 | 0.341112 | 0.129326 |
| SA 6h | 59.5477 | 32.4679 | 0.406864 | 0.213817 |
| Me-JA 6h | 210.855 | 113.12 | 1.43938 | 0.72732 |
Source Transcript PGSC0003DMT400052185 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc02g094400.2 | +1 | 0.0 | 536 | 273/309 (88%) | genomic_reference:SL2.50ch02 gene_region:49509646-49511664 transcript_region:SL2.50ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase |
| TAIR PP10 | AT3G02040.1 | +1 | 3e-126 | 377 | 193/310 (62%) | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361 |