Probe CUST_1023_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1023_PI426222305 | JHI_St_60k_v1 | DMT400052184 | TAACAAACAATGGCTCTTACGGCCGCCGTTCATATTTCCGATGTCCCCAATCTAGATCAA |
All Microarray Probes Designed to Gene DMG403020240
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1071_PI426222305 | JHI_St_60k_v1 | DMT400052185 | CTAGTTAACAAGATCAAAGAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAAAAAA |
| CUST_724_PI426222305 | JHI_St_60k_v1 | DMT400052182 | GAGTAGGAAAACCAATTGTCCCTGTGGCTGTGAATCATATTAATACTACAACAGTATTTA |
| CUST_1023_PI426222305 | JHI_St_60k_v1 | DMT400052184 | TAACAAACAATGGCTCTTACGGCCGCCGTTCATATTTCCGATGTCCCCAATCTAGATCAA |
| CUST_869_PI426222305 | JHI_St_60k_v1 | DMT400052183 | TCTGCTTGTCAAGAATCTCCAGACTTGTTACCCTAAAAATTATGCAGTTTGTTCACCACA |
Microarray Signals from CUST_1023_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 5.75531 | 3.33455 | 0.898895 | 0.520514 |
| ABA 1h | 7.51625 | 3.2944 | 1.30221 | 0.592541 |
| ACC 1h | 6.75696 | 3.69318 | 1.02167 | 0.561234 |
| BABA 1h | 6.17387 | 3.57709 | 1.00079 | 0.579764 |
| Chitin 1h | 6.3313 | 3.43772 | 1.0891 | 0.596045 |
| Epi 1h | 5.83864 | 3.38723 | 1.05233 | 0.609409 |
| SA 1h | 5.8063 | 3.36946 | 0.882753 | 0.511968 |
| Me-JA 1h | 5.96581 | 3.46094 | 1.14002 | 0.660238 |
| Control 6h | 6.27112 | 3.51796 | 0.977556 | 0.548259 |
| ABA 6h | 10.4769 | 4.18313 | 1.33231 | 0.622351 |
| ACC 6h | 7.51935 | 4.35378 | 1.00036 | 0.561123 |
| BABA 6h | 6.89262 | 3.96867 | 0.960382 | 0.551251 |
| Chitin 6h | 6.65247 | 3.85796 | 0.976354 | 0.566048 |
| Epi 6h | 7.01088 | 4.09165 | 0.964395 | 0.558566 |
| SA 6h | 25.2793 | 18.7912 | 2.18443 | 2.3384 |
| Me-JA 6h | 10.6613 | 3.59786 | 1.53671 | 0.616588 |
Source Transcript PGSC0003DMT400052184 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc02g094400.2 | +1 | 0.0 | 688 | 352/372 (95%) | genomic_reference:SL2.50ch02 gene_region:49509646-49511664 transcript_region:SL2.50ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase |
| TAIR PP10 | AT3G02040.1 | +1 | 4e-165 | 478 | 238/364 (65%) | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361 |