Probe CUST_869_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_869_PI426222305 | JHI_St_60k_v1 | DMT400052183 | TCTGCTTGTCAAGAATCTCCAGACTTGTTACCCTAAAAATTATGCAGTTTGTTCACCACA |
All Microarray Probes Designed to Gene DMG403020240
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1071_PI426222305 | JHI_St_60k_v1 | DMT400052185 | CTAGTTAACAAGATCAAAGAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAAAAAA |
| CUST_724_PI426222305 | JHI_St_60k_v1 | DMT400052182 | GAGTAGGAAAACCAATTGTCCCTGTGGCTGTGAATCATATTAATACTACAACAGTATTTA |
| CUST_1023_PI426222305 | JHI_St_60k_v1 | DMT400052184 | TAACAAACAATGGCTCTTACGGCCGCCGTTCATATTTCCGATGTCCCCAATCTAGATCAA |
| CUST_869_PI426222305 | JHI_St_60k_v1 | DMT400052183 | TCTGCTTGTCAAGAATCTCCAGACTTGTTACCCTAAAAATTATGCAGTTTGTTCACCACA |
Microarray Signals from CUST_869_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 236.555 | 69.4236 | 6.68567 | 1.45987 |
| ABA 1h | 72.5376 | 17.768 | 2.34151 | 0.490854 |
| ACC 1h | 117.911 | 39.8692 | 3.02368 | 1.09975 |
| BABA 1h | 62.1102 | 26.7914 | 1.55378 | 0.756461 |
| Chitin 1h | 19.4781 | 3.93021 | 0.637684 | 0.13689 |
| Epi 1h | 60.8103 | 13.1472 | 2.02689 | 0.503169 |
| SA 1h | 44.4136 | 16.4729 | 1.15156 | 0.383267 |
| Me-JA 1h | 29.5668 | 4.78451 | 1.07968 | 0.249717 |
| Control 6h | 22.7071 | 15.7317 | 0.421259 | 0.390176 |
| ABA 6h | 276.315 | 124.546 | 6.53417 | 2.77374 |
| ACC 6h | 34.9439 | 23.6559 | 0.582728 | 0.38665 |
| BABA 6h | 20.3485 | 6.36098 | 0.505737 | 0.152985 |
| Chitin 6h | 23.7138 | 7.1466 | 0.597311 | 0.264591 |
| Epi 6h | 16.1649 | 7.68951 | 0.35172 | 0.154301 |
| SA 6h | 20.0283 | 10.3317 | 0.471481 | 0.235463 |
| Me-JA 6h | 63.7469 | 37.622 | 1.38625 | 0.837697 |
Source Transcript PGSC0003DMT400052183 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc02g094400.2 | +1 | 1e-149 | 410 | 204/212 (96%) | genomic_reference:SL2.50ch02 gene_region:49509646-49511664 transcript_region:SL2.50ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase |
| TAIR PP10 | AT3G02040.1 | +1 | 1e-102 | 311 | 148/212 (70%) | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361 |