Probe CUST_405_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_405_PI426222305 | JHI_St_60k_v1 | DMT400024173 | AGTTATAGGCTTGACCAATAATGGCATCTCAGTTCGCCGAATCATCTATTTTGTGCCGTG |
All Microarray Probes Designed to Gene DMG401009344
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_276_PI426222305 | JHI_St_60k_v1 | DMT400024176 | GCAATACAATTGTTTTGTTGTACCATACACTCCAGCAGAGTTTTGGAGTATTATTTGACT |
| CUST_284_PI426222305 | JHI_St_60k_v1 | DMT400024174 | ATGATGCGCATTCTATATGCTTTATGCATTCACTGCCCCTTCTGTCCTCTGTTCGTCTGT |
| CUST_507_PI426222305 | JHI_St_60k_v1 | DMT400024175 | GCAATACAATTGTTTTGTTGTACCATACACTCCAGCAGAGTTTTGGAGTATTATTTGACT |
| CUST_405_PI426222305 | JHI_St_60k_v1 | DMT400024173 | AGTTATAGGCTTGACCAATAATGGCATCTCAGTTCGCCGAATCATCTATTTTGTGCCGTG |
Microarray Signals from CUST_405_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 6.12418 | 3.10376 | 0.998992 | 0.519407 |
| ABA 1h | 6.79352 | 2.99594 | 1.19365 | 0.585947 |
| ACC 1h | 5.96482 | 3.4696 | 0.953858 | 0.553248 |
| BABA 1h | 6.29346 | 3.24475 | 1.06465 | 0.560055 |
| Chitin 1h | 8.93906 | 3.27917 | 1.44964 | 0.668454 |
| Epi 1h | 5.70223 | 3.05252 | 1.08986 | 0.581366 |
| SA 1h | 5.83955 | 3.06774 | 0.929654 | 0.495583 |
| Me-JA 1h | 9.86763 | 3.21151 | 1.97989 | 0.652 |
| Control 6h | 6.8832 | 3.24591 | 1.09292 | 0.55088 |
| ABA 6h | 11.6244 | 4.22646 | 1.57111 | 0.61177 |
| ACC 6h | 6.79505 | 3.92534 | 0.957924 | 0.539477 |
| BABA 6h | 14.527 | 7.11112 | 1.6896 | 0.867702 |
| Chitin 6h | 6.12852 | 3.55042 | 0.947839 | 0.548822 |
| Epi 6h | 6.362 | 3.72289 | 0.921379 | 0.534243 |
| SA 6h | 5.79896 | 3.35885 | 0.965457 | 0.559078 |
| Me-JA 6h | 9.31985 | 3.25123 | 1.44846 | 0.575843 |
Source Transcript PGSC0003DMT400024173 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc04g076300.2 | +3 | 0.0 | 782 | 402/415 (97%) | genomic_reference:SL2.50ch04 gene_region:58808337-58816333 transcript_region:SL2.50ch04:58808337..58816333- go_terms:GO:0005216 functional_description:Transporter small conductance mechanosensitive ion channel (MscS) family (AHRD V1 *-** A7ZLG1_ECO24); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS |
| TAIR PP10 | AT1G58200.1 | +3 | 4e-170 | 503 | 263/416 (63%) | MSCS-like 3 | chr1:21548370-21552488 REVERSE LENGTH=678 |